Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WPJ entry

There are 4 chains in PDB entry 5WPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 371
B	LYS 11	SER 424
C	ILE 3	THR 372
D	LYS 2	SER 424

There are 64 helices in PDB entry 5WPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	27	36	Right-handed alpha
Helix 3	AA3	A	41	49	Right-handed alpha
Helix 4	AA4	A	83	98	Right-handed alpha
Helix 5	AA5	A	121	132	Right-handed alpha
Helix 6	AA6	A	132	144	Right-handed alpha
Helix 7	AA7	A	144	150	Right-handed alpha
Helix 8	AA8	A	182	202	Right-handed alpha
Helix 9	AA9	A	228	230	Right-handed 310
Helix 10	AB1	A	234	254	Right-handed alpha
Helix 11	AB2	A	254	276	Right-handed alpha
Helix 12	AB3	A	279	291	Right-handed alpha
Helix 13	AB4	A	332	342	Right-handed alpha
Helix 14	AB5	A	346	371	Right-handed alpha
Helix 15	AB6	B	12	24	Right-handed alpha
Helix 16	AB7	B	27	36	Right-handed alpha
Helix 17	AB8	B	41	49	Right-handed alpha
Helix 18	AB9	B	83	98	Right-handed alpha
Helix 19	AC1	B	121	132	Right-handed alpha
Helix 20	AC2	B	132	144	Right-handed alpha
Helix 21	AC3	B	145	150	Right-handed alpha
Helix 22	AC4	B	182	202	Right-handed alpha
Helix 23	AC5	B	228	230	Right-handed 310
Helix 24	AC6	B	233	254	Right-handed alpha
Helix 25	AC7	B	254	276	Right-handed alpha
Helix 26	AC8	B	279	291	Right-handed alpha
Helix 27	AC9	B	332	342	Right-handed alpha
Helix 28	AD1	B	346	371	Right-handed alpha
Helix 29	AD2	B	377	391	Right-handed alpha
Helix 30	AD3	B	393	395	Right-handed 310
Helix 31	AD4	B	396	406	Right-handed alpha
Helix 32	AD5	B	411	424	Right-handed alpha
Helix 33	AD6	C	12	24	Right-handed alpha
Helix 34	AD7	C	27	36	Right-handed alpha
Helix 35	AD8	C	41	49	Right-handed alpha
Helix 36	AD9	C	83	98	Right-handed alpha
Helix 37	AE1	C	121	132	Right-handed alpha
Helix 38	AE2	C	132	144	Right-handed alpha
Helix 39	AE3	C	144	150	Right-handed alpha
Helix 40	AE4	C	182	202	Right-handed alpha
Helix 41	AE5	C	228	230	Right-handed 310
Helix 42	AE6	C	235	254	Right-handed alpha
Helix 43	AE7	C	254	276	Right-handed alpha
Helix 44	AE8	C	279	291	Right-handed alpha
Helix 45	AE9	C	332	342	Right-handed alpha
Helix 46	AF1	C	346	371	Right-handed alpha
Helix 47	AF2	D	12	24	Right-handed alpha
Helix 48	AF3	D	27	36	Right-handed alpha
Helix 49	AF4	D	41	49	Right-handed alpha
Helix 50	AF5	D	83	98	Right-handed alpha
Helix 51	AF6	D	121	132	Right-handed alpha
Helix 52	AF7	D	132	144	Right-handed alpha
Helix 53	AF8	D	144	150	Right-handed alpha
Helix 54	AF9	D	182	202	Right-handed alpha
Helix 55	AG1	D	228	230	Right-handed 310
Helix 56	AG2	D	233	235	Right-handed 310
Helix 57	AG3	D	236	254	Right-handed alpha
Helix 58	AG4	D	254	276	Right-handed alpha
Helix 59	AG5	D	279	291	Right-handed alpha
Helix 60	AG6	D	332	342	Right-handed alpha
Helix 61	AG7	D	346	371	Right-handed alpha
Helix 62	AG8	D	378	391	Right-handed alpha
Helix 63	AG9	D	393	408	Right-handed alpha
Helix 64	AH1	D	411	423	Right-handed alpha

There are 10 sheets in PDB entry 5WPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	77	first strand
Strand 2	A	52	68	anti-parallel
Strand 3	B	52	68	anti-parallel
Strand 4	B	71	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	218	226	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	301	306	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	162	first strand
Strand 2	A	168	176	anti-parallel
Strand 3	A	110	117	anti-parallel
Strand 4	A	204	211	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	218	226	anti-parallel
Strand 3	B	311	319	anti-parallel
Strand 4	B	301	306	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	162	first strand
Strand 2	B	168	176	anti-parallel
Strand 3	B	110	117	anti-parallel
Strand 4	B	204	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	77	first strand
Strand 2	C	52	68	anti-parallel
Strand 3	D	52	68	anti-parallel
Strand 4	D	71	77	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	218	226	anti-parallel
Strand 3	C	311	319	anti-parallel
Strand 4	C	301	306	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	162	first strand
Strand 2	C	168	176	anti-parallel
Strand 3	C	110	117	anti-parallel
Strand 4	C	204	211	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	218	226	anti-parallel
Strand 3	D	311	319	anti-parallel
Strand 4	D	301	306	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	162	first strand
Strand 2	D	168	176	anti-parallel
Strand 3	D	110	117	anti-parallel
Strand 4	D	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPJ