Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WPK entry

There are 2 chains in PDB entry 5WPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1MET 379
B
 ILE 3SER 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5WPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
12 24Right-handed alpha
Helix 3
AA3
A
27 36Right-handed alpha
Helix 4
AA4
A
41 49Right-handed alpha
Helix 5
AA5
A
83 98Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
144 150Right-handed alpha
Helix 9
AA9
A
182 202Right-handed alpha
Helix 10
AB1
A
214 216Right-handed 310
Helix 11
AB2
A
228 230Right-handed 310
Helix 12
AB3
A
236 254Right-handed alpha
Helix 13
AB4
A
254 276Right-handed alpha
Helix 14
AB5
A
279 291Right-handed alpha
Helix 15
AB6
A
332 342Right-handed alpha
Helix 16
AB7
A
346 371Right-handed alpha
Helix 17
AB8
B
7 11Right-handed 310
Helix 18
AB9
B
12 24Right-handed alpha
Helix 19
AC1
B
27 36Right-handed alpha
Helix 20
AC2
B
41 49Right-handed alpha
Helix 21
AC3
B
83 98Right-handed alpha
Helix 22
AC4
B
121 131Right-handed alpha
Helix 23
AC5
B
132 141Right-handed alpha
Helix 24
AC6
B
183 202Right-handed alpha
Helix 25
AC7
B
214 216Right-handed 310
Helix 26
AC8
B
227 231Right-handed alpha
Helix 27
AC9
B
235 254Right-handed alpha
Helix 28
AD1
B
254 276Right-handed alpha
Helix 29
AD2
B
279 291Right-handed alpha
Helix 30
AD3
B
332 342Right-handed alpha
Helix 31
AD4
B
346 371Right-handed alpha
Helix 32
AD5
B
375 390Right-handed alpha
Helix 33
AD6
B
393 395Right-handed 310
Helix 34
AD7
B
396 407Right-handed alpha
Helix 35
AD8
B
411 424Right-handed alpha
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There are 5 sheets in PDB entry 5WPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 77first strand
Strand 2
A
52 68anti-parallel
Strand 3
B
52 68anti-parallel
Strand 4
B
71 77anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
218 226anti-parallel
Strand 3
A
311 319anti-parallel
Strand 4
A
301 306anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 162first strand
Strand 2
A
168 176anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
204 211anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
218 226anti-parallel
Strand 3
B
311 319anti-parallel
Strand 4
B
301 306anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 162first strand
Strand 2
B
168 176anti-parallel
Strand 3
B
109 117anti-parallel
Strand 4
B
204 210anti-parallel
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