Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WPV entry

There are 4 chains in PDB entry 5WPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 38	PRO 527
B	GLU 38	PRO 527
C	GLU 38	PRO 527
D	GLU 38	PRO 527

There are 64 helices in PDB entry 5WPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	49	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	67	85	Right-handed alpha
Helix 4	AA4	A	85	106	Right-handed alpha
Helix 5	AA5	A	122	138	Right-handed alpha
Helix 6	AA6	A	139	142	Right-handed 310
Helix 7	AA7	A	242	247	Right-handed alpha
Helix 8	AA8	A	297	337	Right-handed alpha
Helix 9	AA9	A	353	378	Right-handed alpha
Helix 10	AB1	A	382	400	Right-handed alpha
Helix 11	AB2	A	401	406	Right-handed alpha
Helix 12	AB3	A	410	416	Right-handed alpha
Helix 13	AB4	A	421	447	Right-handed alpha
Helix 14	AB5	A	456	470	Right-handed alpha
Helix 15	AB6	A	472	482	Right-handed alpha
Helix 16	AB7	A	487	526	Right-handed alpha
Helix 17	AB8	B	39	49	Right-handed alpha
Helix 18	AB9	B	51	59	Right-handed alpha
Helix 19	AC1	B	67	85	Right-handed alpha
Helix 20	AC2	B	85	106	Right-handed alpha
Helix 21	AC3	B	122	138	Right-handed alpha
Helix 22	AC4	B	139	142	Right-handed 310
Helix 23	AC5	B	242	247	Right-handed alpha
Helix 24	AC6	B	297	337	Right-handed alpha
Helix 25	AC7	B	353	378	Right-handed alpha
Helix 26	AC8	B	382	400	Right-handed alpha
Helix 27	AC9	B	401	406	Right-handed alpha
Helix 28	AD1	B	410	416	Right-handed alpha
Helix 29	AD2	B	421	447	Right-handed alpha
Helix 30	AD3	B	456	470	Right-handed alpha
Helix 31	AD4	B	472	482	Right-handed alpha
Helix 32	AD5	B	487	526	Right-handed alpha
Helix 33	AD6	C	39	49	Right-handed alpha
Helix 34	AD7	C	51	59	Right-handed alpha
Helix 35	AD8	C	67	85	Right-handed alpha
Helix 36	AD9	C	85	106	Right-handed alpha
Helix 37	AE1	C	122	138	Right-handed alpha
Helix 38	AE2	C	139	142	Right-handed 310
Helix 39	AE3	C	242	247	Right-handed alpha
Helix 40	AE4	C	297	337	Right-handed alpha
Helix 41	AE5	C	353	378	Right-handed alpha
Helix 42	AE6	C	382	400	Right-handed alpha
Helix 43	AE7	C	401	406	Right-handed alpha
Helix 44	AE8	C	410	416	Right-handed alpha
Helix 45	AE9	C	421	447	Right-handed alpha
Helix 46	AF1	C	456	470	Right-handed alpha
Helix 47	AF2	C	472	482	Right-handed alpha
Helix 48	AF3	C	487	526	Right-handed alpha
Helix 49	AF4	D	39	49	Right-handed alpha
Helix 50	AF5	D	51	59	Right-handed alpha
Helix 51	AF6	D	67	85	Right-handed alpha
Helix 52	AF7	D	85	106	Right-handed alpha
Helix 53	AF8	D	122	138	Right-handed alpha
Helix 54	AF9	D	139	142	Right-handed 310
Helix 55	AG1	D	242	247	Right-handed alpha
Helix 56	AG2	D	297	337	Right-handed alpha
Helix 57	AG3	D	353	378	Right-handed alpha
Helix 58	AG4	D	382	400	Right-handed alpha
Helix 59	AG5	D	401	406	Right-handed alpha
Helix 60	AG6	D	410	416	Right-handed alpha
Helix 61	AG7	D	421	447	Right-handed alpha
Helix 62	AG8	D	456	470	Right-handed alpha
Helix 63	AG9	D	472	482	Right-handed alpha
Helix 64	AH1	D	487	526	Right-handed alpha

There are 8 sheets in PDB entry 5WPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	252	263	anti-parallel
Strand 4	A	230	240	anti-parallel
Strand 5	A	163	172	anti-parallel
Strand 6	A	185	195	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	230	240	anti-parallel
Strand 3	A	252	263	anti-parallel
Strand 4	A	282	283	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	252	263	anti-parallel
Strand 4	B	230	240	anti-parallel
Strand 5	B	163	172	anti-parallel
Strand 6	B	185	195	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	230	240	anti-parallel
Strand 3	B	252	263	anti-parallel
Strand 4	B	282	283	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	271	276	anti-parallel
Strand 3	C	252	263	anti-parallel
Strand 4	C	230	240	anti-parallel
Strand 5	C	163	172	anti-parallel
Strand 6	C	185	195	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	230	240	anti-parallel
Strand 3	C	252	263	anti-parallel
Strand 4	C	282	283	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	271	276	anti-parallel
Strand 3	D	252	263	anti-parallel
Strand 4	D	230	240	anti-parallel
Strand 5	D	163	172	anti-parallel
Strand 6	D	185	195	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	230	240	anti-parallel
Strand 3	D	252	263	anti-parallel
Strand 4	D	282	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPV