Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WPW entry

There are 2 chains in PDB entry 5WPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 43	PRO 458
B	GLU 44	PRO 458

There are 18 helices in PDB entry 5WPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	80	Right-handed alpha
Helix 2	AA2	A	221	225	Right-handed 310
Helix 3	AA3	A	226	235	Right-handed alpha
Helix 4	AA4	A	237	245	Right-handed alpha
Helix 5	AA5	A	282	290	Right-handed 310
Helix 6	AA6	A	298	302	Right-handed 310
Helix 7	AA7	A	322	327	Right-handed alpha
Helix 8	AA8	A	427	436	Right-handed alpha
Helix 9	AA9	A	438	448	Right-handed alpha
Helix 10	AB1	B	73	80	Right-handed alpha
Helix 11	AB2	B	221	225	Right-handed 310
Helix 12	AB3	B	226	235	Right-handed alpha
Helix 13	AB4	B	237	244	Right-handed alpha
Helix 14	AB5	B	282	290	Right-handed 310
Helix 15	AB6	B	298	302	Right-handed 310
Helix 16	AB7	B	322	327	Right-handed alpha
Helix 17	AB8	B	427	436	Right-handed alpha
Helix 18	AB9	B	438	448	Right-handed alpha

There are 16 sheets in PDB entry 5WPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	82	88	anti-parallel
Strand 4	A	176	182	anti-parallel
Strand 5	A	103	109	anti-parallel
Strand 6	A	156	160	anti-parallel
Strand 7	A	293	295	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	112	116	anti-parallel
Strand 3	A	166	169	anti-parallel
Strand 4	A	92	99	anti-parallel
Strand 5	A	197	199	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	112	116	anti-parallel
Strand 3	A	166	169	anti-parallel
Strand 4	A	92	99	anti-parallel
Strand 5	A	254	256	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	144	146	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	218	219	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	329	335	anti-parallel
Strand 4	A	390	406	anti-parallel
Strand 5	A	351	365	anti-parallel
Strand 6	A	371	378	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	351	365	anti-parallel
Strand 3	A	390	406	anti-parallel
Strand 4	A	340	346	anti-parallel
Strand 5	A	413	415	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	340	346	anti-parallel
Strand 3	A	413	415	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	64	68	anti-parallel
Strand 3	B	82	88	anti-parallel
Strand 4	B	176	182	anti-parallel
Strand 5	B	103	109	anti-parallel
Strand 6	B	156	160	anti-parallel
Strand 7	B	293	295	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	92	99	anti-parallel
Strand 5	B	197	199	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	92	99	anti-parallel
Strand 5	B	254	256	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	144	146	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	218	219	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	329	335	anti-parallel
Strand 4	B	390	406	anti-parallel
Strand 5	B	351	365	anti-parallel
Strand 6	B	371	378	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	351	365	anti-parallel
Strand 3	B	390	406	anti-parallel
Strand 4	B	340	346	anti-parallel
Strand 5	B	413	415	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	340	346	anti-parallel
Strand 3	B	413	415	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPW