Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WPZ entry

There are 6 chains in PDB entry 5WPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	ALA 460
B	LYS 1	LYS 462
C	LYS 1	LYS 461
D	LYS 1	VAL 459
E	LYS 1	ILE 463
F	LYS 1	VAL 459

There are154 helices in PDB entry 5WPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	131	141	Right-handed alpha
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	228	230	Right-handed 310
Helix 11	AB2	A	231	238	Right-handed alpha
Helix 12	AB3	A	272	283	Right-handed alpha
Helix 13	AB4	A	286	297	Right-handed alpha
Helix 14	AB5	A	304	312	Right-handed alpha
Helix 15	AB6	A	314	325	Right-handed alpha
Helix 16	AB7	A	335	352	Right-handed alpha
Helix 17	AB8	A	356	370	Right-handed alpha
Helix 18	AB9	A	371	382	Right-handed alpha
Helix 19	AC1	A	383	387	Right-handed 310
Helix 20	AC2	A	388	399	Right-handed alpha
Helix 21	AC3	A	399	404	Right-handed alpha
Helix 22	AC4	A	406	413	Right-handed alpha
Helix 23	AC5	A	414	426	Right-handed alpha
Helix 24	AC6	A	428	440	Right-handed alpha
Helix 25	AC7	A	442	444	Right-handed 310
Helix 26	AC8	A	445	460	Right-handed alpha
Helix 27	AC9	B	16	32	Right-handed alpha
Helix 28	AD1	B	42	53	Right-handed alpha
Helix 29	AD2	B	66	73	Right-handed alpha
Helix 30	AD3	B	82	87	Right-handed alpha
Helix 31	AD4	B	90	97	Right-handed alpha
Helix 32	AD5	B	131	141	Right-handed alpha
Helix 33	AD6	B	153	164	Right-handed alpha
Helix 34	AD7	B	185	201	Right-handed alpha
Helix 35	AD8	B	209	219	Right-handed alpha
Helix 36	AD9	B	228	230	Right-handed 310
Helix 37	AE1	B	231	238	Right-handed alpha
Helix 38	AE2	B	272	283	Right-handed alpha
Helix 39	AE3	B	286	297	Right-handed alpha
Helix 40	AE4	B	304	312	Right-handed alpha
Helix 41	AE5	B	314	327	Right-handed alpha
Helix 42	AE6	B	335	352	Right-handed alpha
Helix 43	AE7	B	356	369	Right-handed alpha
Helix 44	AE8	B	371	382	Right-handed alpha
Helix 45	AE9	B	383	387	Right-handed 310
Helix 46	AF1	B	388	400	Right-handed alpha
Helix 47	AF2	B	406	413	Right-handed alpha
Helix 48	AF3	B	414	426	Right-handed alpha
Helix 49	AF4	B	428	440	Right-handed alpha
Helix 50	AF5	B	442	444	Right-handed 310
Helix 51	AF6	B	445	460	Right-handed alpha
Helix 52	AF7	C	16	32	Right-handed alpha
Helix 53	AF8	C	42	53	Right-handed alpha
Helix 54	AF9	C	66	73	Right-handed alpha
Helix 55	AG1	C	82	87	Right-handed alpha
Helix 56	AG2	C	90	97	Right-handed alpha
Helix 57	AG3	C	128	130	Right-handed 310
Helix 58	AG4	C	131	140	Right-handed alpha
Helix 59	AG5	C	141	143	Right-handed 310
Helix 60	AG6	C	153	164	Right-handed alpha
Helix 61	AG7	C	185	201	Right-handed alpha
Helix 62	AG8	C	209	219	Right-handed alpha
Helix 63	AG9	C	228	230	Right-handed 310
Helix 64	AH1	C	231	238	Right-handed alpha
Helix 65	AH2	C	272	283	Right-handed alpha
Helix 66	AH3	C	286	297	Right-handed alpha
Helix 67	AH4	C	304	312	Right-handed alpha
Helix 68	AH5	C	314	327	Right-handed alpha
Helix 69	AH6	C	335	353	Right-handed alpha
Helix 70	AH7	C	356	370	Right-handed alpha
Helix 71	AH8	C	371	382	Right-handed alpha
Helix 72	AH9	C	383	387	Right-handed 310
Helix 73	AI1	C	388	399	Right-handed alpha
Helix 74	AI2	C	399	404	Right-handed alpha
Helix 75	AI3	C	406	413	Right-handed alpha
Helix 76	AI4	C	414	426	Right-handed alpha
Helix 77	AI5	C	428	439	Right-handed alpha
Helix 78	AI6	C	440	444	Right-handed 310
Helix 79	AI7	C	445	461	Right-handed alpha
Helix 80	AI8	D	16	32	Right-handed alpha
Helix 81	AI9	D	42	53	Right-handed alpha
Helix 82	AJ1	D	66	73	Right-handed alpha
Helix 83	AJ2	D	82	87	Right-handed alpha
Helix 84	AJ3	D	90	97	Right-handed alpha
Helix 85	AJ4	D	128	130	Right-handed 310
Helix 86	AJ5	D	131	141	Right-handed alpha
Helix 87	AJ6	D	153	162	Right-handed alpha
Helix 88	AJ7	D	185	201	Right-handed alpha
Helix 89	AJ8	D	209	219	Right-handed alpha
Helix 90	AJ9	D	228	230	Right-handed 310
Helix 91	AK1	D	231	238	Right-handed alpha
Helix 92	AK2	D	272	283	Right-handed alpha
Helix 93	AK3	D	286	297	Right-handed alpha
Helix 94	AK4	D	304	312	Right-handed alpha
Helix 95	AK5	D	314	327	Right-handed alpha
Helix 96	AK6	D	335	353	Right-handed alpha
Helix 97	AK7	D	356	370	Right-handed alpha
Helix 98	AK8	D	373	382	Right-handed alpha
Helix 99	AK9	D	383	387	Right-handed 310
Helix 100	AL1	D	388	399	Right-handed alpha
Helix 101	AL2	D	399	404	Right-handed alpha
Helix 102	AL3	D	406	413	Right-handed alpha
Helix 103	AL4	D	414	426	Right-handed alpha
Helix 104	AL5	D	428	440	Right-handed alpha
Helix 105	AL6	D	442	444	Right-handed 310
Helix 106	AL7	D	445	457	Right-handed alpha
Helix 107	AL8	E	16	32	Right-handed alpha
Helix 108	AL9	E	42	54	Right-handed alpha
Helix 109	AM1	E	66	74	Right-handed alpha
Helix 110	AM2	E	82	87	Right-handed alpha
Helix 111	AM3	E	90	97	Right-handed alpha
Helix 112	AM4	E	131	141	Right-handed alpha
Helix 113	AM5	E	153	162	Right-handed alpha
Helix 114	AM6	E	185	201	Right-handed alpha
Helix 115	AM7	E	209	219	Right-handed alpha
Helix 116	AM8	E	228	230	Right-handed 310
Helix 117	AM9	E	231	238	Right-handed alpha
Helix 118	AN1	E	272	283	Right-handed alpha
Helix 119	AN2	E	286	297	Right-handed alpha
Helix 120	AN3	E	304	312	Right-handed alpha
Helix 121	AN4	E	314	327	Right-handed alpha
Helix 122	AN5	E	335	352	Right-handed alpha
Helix 123	AN6	E	356	370	Right-handed alpha
Helix 124	AN7	E	371	382	Right-handed alpha
Helix 125	AN8	E	388	399	Right-handed alpha
Helix 126	AN9	E	399	404	Right-handed alpha
Helix 127	AO1	E	406	413	Right-handed alpha
Helix 128	AO2	E	414	426	Right-handed alpha
Helix 129	AO3	E	429	440	Right-handed alpha
Helix 130	AO4	E	442	444	Right-handed 310
Helix 131	AO5	E	445	463	Right-handed alpha
Helix 132	AO6	F	16	32	Right-handed alpha
Helix 133	AO7	F	42	54	Right-handed alpha
Helix 134	AO8	F	66	73	Right-handed alpha
Helix 135	AO9	F	82	87	Right-handed alpha
Helix 136	AP1	F	90	97	Right-handed alpha
Helix 137	AP2	F	131	141	Right-handed alpha
Helix 138	AP3	F	153	162	Right-handed alpha
Helix 139	AP4	F	185	201	Right-handed alpha
Helix 140	AP5	F	209	219	Right-handed alpha
Helix 141	AP6	F	228	230	Right-handed 310
Helix 142	AP7	F	231	238	Right-handed alpha
Helix 143	AP8	F	272	283	Right-handed alpha
Helix 144	AP9	F	286	295	Right-handed alpha
Helix 145	AQ1	F	304	312	Right-handed alpha
Helix 146	AQ2	F	314	327	Right-handed alpha
Helix 147	AQ3	F	335	352	Right-handed alpha
Helix 148	AQ4	F	356	370	Right-handed alpha
Helix 149	AQ5	F	371	382	Right-handed alpha
Helix 150	AQ6	F	388	399	Right-handed alpha
Helix 151	AQ7	F	408	413	Right-handed alpha
Helix 152	AQ8	F	414	426	Right-handed alpha
Helix 153	AQ9	F	429	438	Right-handed alpha
Helix 154	AR1	F	445	456	Right-handed alpha

There are 33 sheets in PDB entry 5WPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	175	182	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	175	182	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	253	254	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	7	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	106	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	7	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	222	227	parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	242	245	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	175	182	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	7	10	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	106	111	anti-parallel
Strand 6	E	301	302	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	7	10	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	328	329	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	103	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	222	227	parallel
Strand 3	E	114	118	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	172	first strand
Strand 2	E	175	182	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	250	first strand
Strand 2	E	253	254	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	7	10	parallel
Strand 3	F	59	63	parallel
Strand 4	F	258	266	anti-parallel
Strand 5	F	106	111	anti-parallel
Strand 6	F	301	302	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	7	10	parallel
Strand 3	F	59	63	parallel
Strand 4	F	258	266	anti-parallel
Strand 5	F	328	329	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	102	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	147	first strand
Strand 2	F	222	227	parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	242	245	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	172	first strand
Strand 2	F	175	182	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	253	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPZ