Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQE entry

There are 2 chains in PDB entry 5WQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1115
B
 G 1 A 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5WQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 44Right-handed alpha
Helix 2
AA2
A
64 83Right-handed alpha
Helix 3
AA3
A
91 107Right-handed alpha
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
116 130Right-handed alpha
Helix 6
AA6
A
175 185Right-handed alpha
Helix 7
AA7
A
214 257Right-handed alpha
Helix 8
AA8
A
260 275Right-handed alpha
Helix 9
AA9
A
298 307Right-handed alpha
Helix 10
AB1
A
314 330Right-handed alpha
Helix 11
AB2
A
335 343Right-handed alpha
Helix 12
AB3
A
347 352Right-handed alpha
Helix 13
AB4
A
356 373Right-handed alpha
Helix 14
AB5
A
444 449Right-handed alpha
Helix 15
AB6
A
486 490Right-handed 310
Helix 16
AB7
A
510 515Right-handed alpha
Helix 17
AB8
A
540 549Right-handed alpha
Helix 18
AB9
A
557 561Right-handed 310
Helix 19
AC1
A
622 626Right-handed 310
Helix 20
AC2
A
628 659Right-handed alpha
Helix 21
AC3
A
664 676Right-handed alpha
Helix 22
AC4
A
685 706Right-handed alpha
Helix 23
AC5
A
707 739Right-handed alpha
Helix 24
AC6
A
757 781Right-handed alpha
Helix 25
AC7
A
794 821Right-handed alpha
Helix 26
AC8
A
865 883Right-handed alpha
Helix 27
AC9
A
976 990Right-handed alpha
Helix 28
AD1
A
993 996Right-handed 310
Helix 29
AD2
A
1020 1026Right-handed alpha
Helix 30
AD3
A
1057 1071Right-handed alpha
Helix 31
AD4
A
1093 1112Right-handed alpha
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There are 10 sheets in PDB entry 5WQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
501 509anti-parallel
Strand 3
A
471 482anti-parallel
Strand 4
A
392 393anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
501 509anti-parallel
Strand 3
A
471 482anti-parallel
Strand 4
A
460 464anti-parallel
Strand 5
A
450 452anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
60 63anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
403 407parallel
Strand 3
A
417 421anti-parallel
Strand 4
A
436 440anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
430 433anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 529first strand
Strand 2
A
534 537anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 603first strand
Strand 2
A
610 620anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
565 571anti-parallel
Strand 5
A
844 848parallel
Strand 6
A
889 893parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 826first strand
Strand 2
A
834 837anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
910 912first strand
Strand 2
A
959 964anti-parallel
Strand 3
A
970 975anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
998 1005first strand
Strand 2
A
1010 1014anti-parallel
Strand 3
A
1029 1031anti-parallel
Strand 4
A
1037 1041anti-parallel
Strand 5
A
1090 1092anti-parallel
Strand 6
A
1074 1078anti-parallel
Strand 7
A
998 1005anti-parallel
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