Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQK entry

There are 4 chains in PDB entry 5WQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5THR 247
A
 GLY 249GLN 297
B
 GLN 5THR 247
B
 GLY 249GLN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5WQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
44 52Right-handed alpha
Helix 4
AA4
A
61 65Right-handed 310
Helix 5
AA5
A
78 89Right-handed alpha
Helix 6
AA6
A
109 120Right-handed alpha
Helix 7
AA7
A
130 138Right-handed alpha
Helix 8
AA8
A
159 161Right-handed 310
Helix 9
AA9
A
165 176Right-handed alpha
Helix 10
AB1
A
185 191Right-handed alpha
Helix 11
AB2
A
212 217Right-handed 310
Helix 12
AB3
A
225 236Right-handed alpha
Helix 13
AB4
A
254 264Right-handed alpha
Helix 14
AB5
A
274 282Right-handed alpha
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
B
12 22Right-handed alpha
Helix 17
AB8
B
38 42Right-handed 310
Helix 18
AB9
B
44 52Right-handed alpha
Helix 19
AC1
B
61 65Right-handed 310
Helix 20
AC2
B
78 89Right-handed alpha
Helix 21
AC3
B
109 120Right-handed alpha
Helix 22
AC4
B
130 138Right-handed alpha
Helix 23
AC5
B
159 161Right-handed 310
Helix 24
AC6
B
165 176Right-handed alpha
Helix 25
AC7
B
185 191Right-handed alpha
Helix 26
AC8
B
212 217Right-handed 310
Helix 27
AC9
B
225 236Right-handed alpha
Helix 28
AD1
B
254 264Right-handed alpha
Helix 29
AD2
B
274 283Right-handed alpha
Helix 30
AD3
B
284 288Right-handed 310
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There are 6 sheets in PDB entry 5WQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
125 128parallel
Strand 3
A
96 100parallel
Strand 4
A
29 33parallel
Strand 5
A
58 59parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
271 272parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
179 182parallel
Strand 3
A
244 247parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
125 128parallel
Strand 3
B
96 100parallel
Strand 4
B
29 33parallel
Strand 5
B
58 59parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
271 272parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
179 182parallel
Strand 3
B
244 247parallel
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