Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WQL entry

There are 8 chains in PDB entry 5WQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 21	LEU 288
A	MET 19	LEU 288
C	ASP 25	ALA 672
D	ASP 25	ARG 673
F	ALA 1	ALA 6
H	ALA 1	ALA 6
E	ALA 1	ALA 4
G	LEU 1	SER 4

There are 80 helices in PDB entry 5WQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	22	28	Right-handed 310
Helix 2	AA2	B	37	52	Right-handed alpha
Helix 3	AA3	B	57	75	Right-handed alpha
Helix 4	AA4	B	77	92	Right-handed alpha
Helix 5	AA5	B	95	109	Right-handed alpha
Helix 6	AA6	B	111	126	Right-handed alpha
Helix 7	AA7	B	130	143	Right-handed alpha
Helix 8	AA8	B	145	160	Right-handed alpha
Helix 9	AA9	B	163	178	Right-handed alpha
Helix 10	AB1	B	178	193	Right-handed alpha
Helix 11	AB2	B	199	207	Right-handed alpha
Helix 12	AB3	B	211	223	Right-handed alpha
Helix 13	AB4	B	225	247	Right-handed alpha
Helix 14	AB5	B	249	262	Right-handed alpha
Helix 15	AB6	B	268	288	Right-handed alpha
Helix 16	AB7	A	23	28	Right-handed alpha
Helix 17	AB8	A	37	53	Right-handed alpha
Helix 18	AB9	A	57	75	Right-handed alpha
Helix 19	AC1	A	77	92	Right-handed alpha
Helix 20	AC2	A	95	109	Right-handed alpha
Helix 21	AC3	A	111	126	Right-handed alpha
Helix 22	AC4	A	130	143	Right-handed alpha
Helix 23	AC5	A	145	160	Right-handed alpha
Helix 24	AC6	A	163	178	Right-handed alpha
Helix 25	AC7	A	178	193	Right-handed alpha
Helix 26	AC8	A	199	208	Right-handed alpha
Helix 27	AC9	A	211	223	Right-handed alpha
Helix 28	AD1	A	225	247	Right-handed alpha
Helix 29	AD2	A	249	262	Right-handed alpha
Helix 30	AD3	A	268	287	Right-handed alpha
Helix 31	AD4	C	28	32	Right-handed 310
Helix 32	AD5	C	40	55	Right-handed alpha
Helix 33	AD6	C	63	79	Right-handed alpha
Helix 34	AD7	C	86	95	Right-handed alpha
Helix 35	AD8	C	96	98	Right-handed 310
Helix 36	AD9	C	99	107	Right-handed alpha
Helix 37	AE1	C	109	135	Right-handed alpha
Helix 38	AE2	C	158	179	Right-handed alpha
Helix 39	AE3	C	183	204	Right-handed alpha
Helix 40	AE4	C	206	223	Right-handed alpha
Helix 41	AE5	C	230	243	Right-handed alpha
Helix 42	AE6	C	299	308	Right-handed alpha
Helix 43	AE7	C	341	344	Right-handed 310
Helix 44	AE8	C	368	383	Right-handed alpha
Helix 45	AE9	C	400	409	Right-handed alpha
Helix 46	AF1	C	452	464	Right-handed alpha
Helix 47	AF2	C	490	495	Right-handed alpha
Helix 48	AF3	C	531	535	Right-handed 310
Helix 49	AF4	C	540	544	Right-handed 310
Helix 50	AF5	C	564	566	Right-handed 310
Helix 51	AF6	C	567	581	Right-handed alpha
Helix 52	AF7	C	582	599	Right-handed alpha
Helix 53	AF8	C	600	602	Right-handed 310
Helix 54	AF9	C	608	634	Right-handed alpha
Helix 55	AG1	C	641	645	Right-handed 310
Helix 56	AG2	C	653	671	Right-handed alpha
Helix 57	AG3	D	28	32	Right-handed 310
Helix 58	AG4	D	40	56	Right-handed alpha
Helix 59	AG5	D	63	79	Right-handed alpha
Helix 60	AG6	D	86	95	Right-handed alpha
Helix 61	AG7	D	99	107	Right-handed alpha
Helix 62	AG8	D	109	136	Right-handed alpha
Helix 63	AG9	D	158	179	Right-handed alpha
Helix 64	AH1	D	184	204	Right-handed alpha
Helix 65	AH2	D	206	223	Right-handed alpha
Helix 66	AH3	D	230	243	Right-handed alpha
Helix 67	AH4	D	268	274	Right-handed alpha
Helix 68	AH5	D	299	308	Right-handed alpha
Helix 69	AH6	D	341	344	Right-handed 310
Helix 70	AH7	D	368	383	Right-handed alpha
Helix 71	AH8	D	400	411	Right-handed alpha
Helix 72	AH9	D	452	464	Right-handed alpha
Helix 73	AI1	D	490	495	Right-handed alpha
Helix 74	AI2	D	531	535	Right-handed 310
Helix 75	AI3	D	540	544	Right-handed 310
Helix 76	AI4	D	567	582	Right-handed alpha
Helix 77	AI5	D	583	598	Right-handed alpha
Helix 78	AI6	D	610	624	Right-handed alpha
Helix 79	AI7	D	626	634	Right-handed alpha
Helix 80	AI8	D	653	672	Right-handed alpha

There are 13 sheets in PDB entry 5WQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	604	606	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	503	512	anti-parallel
Strand 3	C	479	485	anti-parallel
Strand 4	H	2	5	anti-parallel
Strand 5	C	397	399	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	503	512	anti-parallel
Strand 3	C	415	420	anti-parallel
Strand 4	C	426	430	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	336	339	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	334	first strand
Strand 2	C	314	320	anti-parallel
Strand 3	C	281	287	anti-parallel
Strand 4	C	259	264	anti-parallel
Strand 5	C	250	254	anti-parallel
Strand 6	G	2	3	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	352	first strand
Strand 2	C	355	361	anti-parallel
Strand 3	C	387	391	parallel
Strand 4	C	442	446	parallel
Strand 5	C	467	471	parallel
Strand 6	C	528	529	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	604	605	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	503	512	anti-parallel
Strand 3	D	479	485	anti-parallel
Strand 4	F	2	5	anti-parallel
Strand 5	D	397	399	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	503	512	anti-parallel
Strand 3	D	415	420	anti-parallel
Strand 4	D	426	430	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	336	339	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	281	287	anti-parallel
Strand 3	D	314	320	anti-parallel
Strand 4	D	329	334	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	281	287	anti-parallel
Strand 3	D	258	264	anti-parallel
Strand 4	D	250	255	anti-parallel
Strand 5	E	2	3	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	352	first strand
Strand 2	D	355	361	anti-parallel
Strand 3	D	387	391	parallel
Strand 4	D	442	446	parallel
Strand 5	D	468	471	parallel
Strand 6	D	528	529	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQL