Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQO entry

There are 2 chains in PDB entry 5WQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4TRP 229
B
 MET 1TRP 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5WQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
63 73Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
110 121Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
148 167Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
B
11 24Right-handed alpha
Helix 12
AB3
B
34 37Right-handed 310
Helix 13
AB4
B
38 49Right-handed alpha
Helix 14
AB5
B
63 73Right-handed alpha
Helix 15
AB6
B
98 110Right-handed alpha
Helix 16
AB7
B
110 121Right-handed alpha
Helix 17
AB8
B
135 139Right-handed 310
Helix 18
AB9
B
148 167Right-handed alpha
Helix 19
AC1
B
196 212Right-handed alpha
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There are 2 sheets in PDB entry 5WQO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
27 32parallel
Strand 3
A
3 7parallel
Strand 4
A
77 82parallel
Strand 5
A
124 133parallel
Strand 6
A
174 180parallel
Strand 7
A
217 221parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
27 32parallel
Strand 3
B
3 7parallel
Strand 4
B
77 82parallel
Strand 5
B
124 133parallel
Strand 6
B
175 180parallel
Strand 7
B
217 221parallel
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