Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQP entry

There are 2 chains in PDB entry 5WQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TRP 229
B
 SER 0TRP 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5WQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
63 73Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
110 121Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
143 147Right-handed 310
Helix 9
AA9
A
148 167Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
B
11 24Right-handed alpha
Helix 12
AB3
B
34 37Right-handed 310
Helix 13
AB4
B
38 49Right-handed alpha
Helix 14
AB5
B
63 73Right-handed alpha
Helix 15
AB6
B
98 110Right-handed alpha
Helix 16
AB7
B
110 121Right-handed alpha
Helix 17
AB8
B
135 139Right-handed 310
Helix 18
AB9
B
144 147Right-handed 310
Helix 19
AC1
B
148 167Right-handed alpha
Helix 20
AC2
B
188 192Right-handed 310
Helix 21
AC3
B
196 211Right-handed alpha
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There are 2 sheets in PDB entry 5WQP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
27 32parallel
Strand 3
A
3 7parallel
Strand 4
A
77 82parallel
Strand 5
A
124 133parallel
Strand 6
A
175 180parallel
Strand 7
A
217 221parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
27 32parallel
Strand 3
B
3 7parallel
Strand 4
B
77 82parallel
Strand 5
B
124 133parallel
Strand 6
B
175 180parallel
Strand 7
B
217 221parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il