Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQT entry

There are 2 chains in PDB entry 5WQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 207
B
 VAL 2GLU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5WQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 28Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
71 80Right-handed alpha
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
107 120Right-handed alpha
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
149 154Right-handed 310
Helix 9
AA9
A
161 171Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
187 205Right-handed alpha
Helix 12
AB3
B
11 28Right-handed alpha
Helix 13
AB4
B
30 46Right-handed alpha
Helix 14
AB5
B
47 59Right-handed alpha
Helix 15
AB6
B
71 79Right-handed alpha
Helix 16
AB7
B
89 104Right-handed alpha
Helix 17
AB8
B
107 121Right-handed alpha
Helix 18
AB9
B
123 138Right-handed alpha
Helix 19
AC1
B
149 154Right-handed 310
Helix 20
AC2
B
161 171Right-handed alpha
Helix 21
AC3
B
184 186Right-handed 310
Helix 22
AC4
B
187 206Right-handed alpha
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There are 2 sheets in PDB entry 5WQT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
173 174anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
181 183anti-parallel
Strand 3
B
173 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il