Analysis of interatomic Contacts of Structural Units in PDB entry:
5WRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WRI entry

There are 4 chains in PDB entry 5WRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 65PRO 338
B
 ALA 64GLY 336
D
 ASP 1002ASP 1009
E
 ASP 1002ASP 1009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5WRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 91Right-handed alpha
Helix 2
AA2
A
102 116Right-handed alpha
Helix 3
AA3
A
117 127Right-handed alpha
Helix 4
AA4
A
130 149Right-handed alpha
Helix 5
AA5
A
161 165Right-handed 310
Helix 6
AA6
A
166 174Right-handed alpha
Helix 7
AA7
A
185 197Right-handed alpha
Helix 8
AA8
A
207 230Right-handed alpha
Helix 9
AA9
A
239 245Right-handed alpha
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
262 272Right-handed 310
Helix 12
AB3
A
286 291Right-handed alpha
Helix 13
AB4
A
307 313Right-handed alpha
Helix 14
AB5
A
313 318Right-handed alpha
Helix 15
AB6
A
319 324Right-handed alpha
Helix 16
AB7
B
81 91Right-handed alpha
Helix 17
AB8
B
102 117Right-handed alpha
Helix 18
AB9
B
117 127Right-handed alpha
Helix 19
AC1
B
130 149Right-handed alpha
Helix 20
AC2
B
161 165Right-handed 310
Helix 21
AC3
B
166 174Right-handed alpha
Helix 22
AC4
B
185 197Right-handed alpha
Helix 23
AC5
B
207 230Right-handed alpha
Helix 24
AC6
B
239 245Right-handed alpha
Helix 25
AC7
B
245 258Right-handed alpha
Helix 26
AC8
B
262 272Right-handed 310
Helix 27
AC9
B
286 291Right-handed alpha
Helix 28
AD1
B
307 313Right-handed alpha
Helix 29
AD2
B
313 318Right-handed alpha
Helix 30
AD3
B
319 324Right-handed alpha
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There are 4 sheets in PDB entry 5WRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
155 159parallel
Strand 3
A
71 75parallel
Strand 4
A
177 183parallel
Strand 5
A
234 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
D
1006 1007parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
155 159parallel
Strand 3
B
72 75parallel
Strand 4
B
178 183parallel
Strand 5
B
234 238parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
E
1006 1007parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il