Analysis of interatomic Contacts of Structural Units in PDB entry:
5WRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WRT entry

There are 2 chains in PDB entry 5WRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 74GLU 308
B
 VAL 74LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5WRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 185Right-handed 310
Helix 2
AA2
A
239 243Right-handed 310
Helix 3
AA3
A
245 253Right-handed alpha
Helix 4
AA4
A
255 267Right-handed alpha
Helix 5
AA5
A
268 273Right-handed alpha
Helix 6
AA6
A
280 283Right-handed 310
Helix 7
AA7
A
286 306Right-handed alpha
Helix 8
AA8
B
181 185Right-handed 310
Helix 9
AA9
B
239 243Right-handed 310
Helix 10
AB1
B
245 253Right-handed alpha
Helix 11
AB2
B
255 267Right-handed alpha
Helix 12
AB3
B
268 273Right-handed alpha
Helix 13
AB4
B
280 283Right-handed 310
Helix 14
AB5
B
287 305Right-handed alpha
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There are 10 sheets in PDB entry 5WRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
99 100anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
225 234parallel
Strand 3
A
195 198parallel
Strand 4
A
165 168anti-parallel
Strand 5
A
120 126anti-parallel
Strand 6
A
209 222anti-parallel
Strand 7
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
225 234parallel
Strand 3
A
209 222anti-parallel
Strand 4
A
277 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
157 162anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
145 147anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
89 93anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
225 234parallel
Strand 3
B
195 198parallel
Strand 4
B
165 168anti-parallel
Strand 5
B
120 126anti-parallel
Strand 6
B
209 222anti-parallel
Strand 7
B
277 278anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 234first strand
Strand 2
B
209 222anti-parallel
Strand 3
B
285 286anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
157 162anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
145 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il