Analysis of interatomic Contacts of Structural Units in PDB entry:
5WRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WRU entry

There are 4 chains in PDB entry 5WRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 37	PRO 380
B	TYR 36	PRO 380
C	PHE 37	THR 379
D	TYR 36	LYS 302

There are 32 helices in PDB entry 5WRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	61	Right-handed alpha
Helix 2	AA2	A	143	146	Right-handed 310
Helix 3	AA3	A	253	261	Right-handed alpha
Helix 4	AA4	A	263	275	Right-handed alpha
Helix 5	AA5	A	276	281	Right-handed alpha
Helix 6	AA6	A	292	321	Right-handed alpha
Helix 7	AA7	B	54	61	Right-handed alpha
Helix 8	AA8	B	143	146	Right-handed 310
Helix 9	AA9	B	256	261	Right-handed alpha
Helix 10	AB1	B	263	275	Right-handed alpha
Helix 11	AB2	B	276	281	Right-handed alpha
Helix 12	AB3	B	292	320	Right-handed alpha
Helix 13	AB4	B	354	360	Right-handed alpha
Helix 14	AB5	C	54	61	Right-handed alpha
Helix 15	AB6	C	143	146	Right-handed 310
Helix 16	AB7	C	256	260	Right-handed 310
Helix 17	AB8	C	263	275	Right-handed alpha
Helix 18	AB9	C	276	281	Right-handed alpha
Helix 19	AC1	C	292	321	Right-handed alpha
Helix 20	AC2	D	54	61	Right-handed alpha
Helix 21	AC3	D	143	146	Right-handed 310
Helix 22	AC4	D	256	261	Right-handed alpha
Helix 23	AC5	D	263	275	Right-handed alpha
Helix 24	AC6	D	276	281	Right-handed alpha
Helix 25	AC7	D	292	317	Right-handed alpha
Helix 26	AC8	E	54	61	Right-handed alpha
Helix 27	AC9	E	143	146	Right-handed 310
Helix 28	AD1	E	256	260	Right-handed 310
Helix 29	AD2	E	263	275	Right-handed alpha
Helix 30	AD3	E	276	281	Right-handed alpha
Helix 31	AD4	E	292	320	Right-handed alpha
Helix 32	AD5	E	354	360	Right-handed alpha

There are 25 sheets in PDB entry 5WRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	75	first strand
Strand 2	A	78	85	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	104	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	75	first strand
Strand 2	A	78	85	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	148	150	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	233	242	parallel
Strand 3	A	217	230	anti-parallel
Strand 4	A	123	129	anti-parallel
Strand 5	A	167	170	anti-parallel
Strand 6	A	203	206	anti-parallel
Strand 7	A	233	242	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	156	157	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	363	367	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	78	85	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	104	108	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	78	85	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	148	150	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	233	242	parallel
Strand 3	B	217	229	anti-parallel
Strand 4	B	123	129	anti-parallel
Strand 5	B	167	170	anti-parallel
Strand 6	B	203	206	anti-parallel
Strand 7	B	233	242	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	156	157	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	363	367	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	78	85	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	106	108	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	78	85	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	148	150	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	217	229	anti-parallel
Strand 3	C	123	129	anti-parallel
Strand 4	C	167	170	anti-parallel
Strand 5	C	203	206	anti-parallel
Strand 6	C	233	242	parallel
Strand 7	C	194	197	parallel
Strand 8	C	180	183	anti-parallel
Strand 9	C	363	367	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	217	229	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	194	197	parallel
Strand 5	C	180	183	anti-parallel
Strand 6	C	363	367	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	156	157	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	75	first strand
Strand 2	D	78	82	anti-parallel
Strand 3	D	97	100	anti-parallel
Strand 4	D	105	108	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	148	150	anti-parallel
Strand 3	D	137	139	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	129	first strand
Strand 2	D	167	170	anti-parallel
Strand 3	D	203	206	anti-parallel
Strand 4	D	234	242	parallel
Strand 5	D	217	229	anti-parallel
Strand 6	D	123	129	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	156	157	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	363	364	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	78	85	anti-parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	104	108	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	78	85	anti-parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	148	150	anti-parallel
Strand 5	E	137	139	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	217	230	anti-parallel
Strand 3	E	233	242	anti-parallel
Strand 4	E	203	206	parallel
Strand 5	E	167	170	anti-parallel
Strand 6	E	123	129	anti-parallel
Strand 7	E	217	230	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	156	157	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	195	first strand
Strand 2	E	180	184	anti-parallel
Strand 3	E	363	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WRU