Analysis of interatomic Contacts of Structural Units in PDB entry:
5WS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WS4 entry

There are 2 chains in PDB entry 5WS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 664
B
 LYS 3GLU 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5WS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
78 89Right-handed alpha
Helix 3
AA3
A
104 117Right-handed alpha
Helix 4
AA4
A
119 134Right-handed alpha
Helix 5
AA5
A
143 147Right-handed 310
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
178 195Right-handed alpha
Helix 8
AA8
A
205 210Right-handed alpha
Helix 9
AA9
A
231 235Right-handed 310
Helix 10
AB1
A
262 282Right-handed alpha
Helix 11
AB2
A
282 317Right-handed alpha
Helix 12
AB3
A
340 344Right-handed 310
Helix 13
AB4
A
347 356Right-handed alpha
Helix 14
AB5
A
390 396Right-handed alpha
Helix 15
AB6
A
406 412Right-handed alpha
Helix 16
AB7
A
421 428Right-handed alpha
Helix 17
AB8
A
471 478Right-handed alpha
Helix 18
AB9
A
493 495Right-handed 310
Helix 19
AC1
A
496 512Right-handed alpha
Helix 20
AC2
A
522 566Right-handed alpha
Helix 21
AC3
A
566 577Right-handed alpha
Helix 22
AC4
A
579 617Right-handed alpha
Helix 23
AC5
A
626 654Right-handed alpha
Helix 24
AC6
A
656 662Right-handed alpha
Helix 25
AC7
B
48 57Right-handed alpha
Helix 26
AC8
B
78 89Right-handed alpha
Helix 27
AC9
B
104 116Right-handed alpha
Helix 28
AD1
B
119 134Right-handed alpha
Helix 29
AD2
B
143 147Right-handed 310
Helix 30
AD3
B
148 163Right-handed alpha
Helix 31
AD4
B
178 195Right-handed alpha
Helix 32
AD5
B
205 210Right-handed alpha
Helix 33
AD6
B
231 235Right-handed 310
Helix 34
AD7
B
263 282Right-handed alpha
Helix 35
AD8
B
282 320Right-handed alpha
Helix 36
AD9
B
336 344Right-handed alpha
Helix 37
AE1
B
347 356Right-handed alpha
Helix 38
AE2
B
390 396Right-handed alpha
Helix 39
AE3
B
406 412Right-handed alpha
Helix 40
AE4
B
421 428Right-handed alpha
Helix 41
AE5
B
471 478Right-handed alpha
Helix 42
AE6
B
493 495Right-handed 310
Helix 43
AE7
B
496 512Right-handed alpha
Helix 44
AE8
B
522 566Right-handed alpha
Helix 45
AE9
B
566 577Right-handed alpha
Helix 46
AF1
B
579 614Right-handed alpha
Helix 47
AF2
B
626 645Right-handed alpha
Helix 48
AF3
B
646 654Right-handed alpha
Helix 49
AF4
B
656 662Right-handed alpha
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There are 8 sheets in PDB entry 5WS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 33first strand
Strand 2
A
7 17anti-parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
72 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
167 171parallel
Strand 3
A
198 203parallel
Strand 4
A
38 42parallel
Strand 5
A
214 219parallel
Strand 6
A
222 228anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
444 453anti-parallel
Strand 3
A
416 420parallel
Strand 4
A
466 470anti-parallel
Strand 5
A
379 387parallel
Strand 6
A
360 374anti-parallel
Strand 7
A
486 491anti-parallel
Strand 8
A
325 329anti-parallel
Strand 9
A
518 521anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
444 453anti-parallel
Strand 3
A
438 441anti-parallel
Strand 4
A
360 374anti-parallel
Strand 5
A
486 491anti-parallel
Strand 6
A
325 329anti-parallel
Strand 7
A
518 521anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 33first strand
Strand 2
B
7 17anti-parallel
Strand 3
B
66 69anti-parallel
Strand 4
B
72 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
167 171parallel
Strand 3
B
198 203parallel
Strand 4
B
38 42parallel
Strand 5
B
214 219parallel
Strand 6
B
222 228anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
416 420parallel
Strand 4
B
466 470anti-parallel
Strand 5
B
379 387parallel
Strand 6
B
360 374anti-parallel
Strand 7
B
486 491anti-parallel
Strand 8
B
325 330anti-parallel
Strand 9
B
517 521anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
444 453anti-parallel
Strand 3
B
438 441anti-parallel
Strand 4
B
360 374anti-parallel
Strand 5
B
486 491anti-parallel
Strand 6
B
325 330anti-parallel
Strand 7
B
517 521anti-parallel
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