Analysis of interatomic Contacts of Structural Units in PDB entry:
5WS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WS8 entry

There are 3 chains in PDB entry 5WS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	VAL 472
B	THR 2	VAL 472
C	THR 2	TRP 398

There are 80 helices in PDB entry 5WS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	40	59	Right-handed alpha
Helix 4	AA4	A	111	116	Right-handed alpha
Helix 5	AA5	A	170	184	Right-handed alpha
Helix 6	AA6	A	197	210	Right-handed alpha
Helix 7	AA7	A	221	227	Right-handed alpha
Helix 8	AA8	A	227	235	Right-handed alpha
Helix 9	AA9	A	242	249	Right-handed alpha
Helix 10	AB1	A	250	252	Right-handed 310
Helix 11	AB2	A	253	268	Right-handed alpha
Helix 12	AB3	A	279	284	Right-handed 310
Helix 13	AB4	A	289	303	Right-handed alpha
Helix 14	AB5	A	310	315	Right-handed alpha
Helix 15	AB6	A	318	337	Right-handed alpha
Helix 16	AB7	A	349	365	Right-handed alpha
Helix 17	AB8	A	377	385	Right-handed alpha
Helix 18	AB9	A	399	405	Right-handed alpha
Helix 19	AC1	A	406	408	Right-handed 310
Helix 20	AC2	A	421	435	Right-handed alpha
Helix 21	AC3	B	12	16	Right-handed 310
Helix 22	AC4	B	19	28	Right-handed alpha
Helix 23	AC5	B	40	59	Right-handed alpha
Helix 24	AC6	B	111	116	Right-handed alpha
Helix 25	AC7	B	170	184	Right-handed alpha
Helix 26	AC8	B	197	210	Right-handed alpha
Helix 27	AC9	B	221	227	Right-handed alpha
Helix 28	AD1	B	227	235	Right-handed alpha
Helix 29	AD2	B	242	249	Right-handed alpha
Helix 30	AD3	B	250	252	Right-handed 310
Helix 31	AD4	B	253	268	Right-handed alpha
Helix 32	AD5	B	279	284	Right-handed 310
Helix 33	AD6	B	289	303	Right-handed alpha
Helix 34	AD7	B	310	315	Right-handed alpha
Helix 35	AD8	B	318	337	Right-handed alpha
Helix 36	AD9	B	349	365	Right-handed alpha
Helix 37	AE1	B	377	385	Right-handed alpha
Helix 38	AE2	B	399	405	Right-handed alpha
Helix 39	AE3	B	406	408	Right-handed 310
Helix 40	AE4	B	421	435	Right-handed alpha
Helix 41	AE5	C	12	16	Right-handed 310
Helix 42	AE6	C	19	28	Right-handed alpha
Helix 43	AE7	C	40	59	Right-handed alpha
Helix 44	AE8	C	111	116	Right-handed alpha
Helix 45	AE9	C	170	184	Right-handed alpha
Helix 46	AF1	C	197	210	Right-handed alpha
Helix 47	AF2	C	221	227	Right-handed alpha
Helix 48	AF3	C	227	235	Right-handed alpha
Helix 49	AF4	C	242	249	Right-handed alpha
Helix 50	AF5	C	250	252	Right-handed 310
Helix 51	AF6	C	253	268	Right-handed alpha
Helix 52	AF7	C	279	284	Right-handed 310
Helix 53	AF8	C	289	303	Right-handed alpha
Helix 54	AF9	C	310	315	Right-handed alpha
Helix 55	AG1	C	318	337	Right-handed alpha
Helix 56	AG2	C	349	365	Right-handed alpha
Helix 57	AG3	C	377	385	Right-handed alpha
Helix 58	AG4	C	399	405	Right-handed alpha
Helix 59	AG5	C	406	408	Right-handed 310
Helix 60	AG6	C	421	435	Right-handed alpha
Helix 61	AG7	D	12	16	Right-handed 310
Helix 62	AG8	D	19	28	Right-handed alpha
Helix 63	AG9	D	40	59	Right-handed alpha
Helix 64	AH1	D	111	116	Right-handed alpha
Helix 65	AH2	D	170	184	Right-handed alpha
Helix 66	AH3	D	197	210	Right-handed alpha
Helix 67	AH4	D	221	227	Right-handed alpha
Helix 68	AH5	D	227	235	Right-handed alpha
Helix 69	AH6	D	242	249	Right-handed alpha
Helix 70	AH7	D	250	252	Right-handed 310
Helix 71	AH8	D	253	268	Right-handed alpha
Helix 72	AH9	D	279	284	Right-handed 310
Helix 73	AI1	D	289	303	Right-handed alpha
Helix 74	AI2	D	310	315	Right-handed alpha
Helix 75	AI3	D	318	337	Right-handed alpha
Helix 76	AI4	D	349	365	Right-handed alpha
Helix 77	AI5	D	377	385	Right-handed alpha
Helix 78	AI6	D	399	405	Right-handed alpha
Helix 79	AI7	D	406	408	Right-handed 310
Helix 80	AI8	D	421	435	Right-handed alpha

There are 14 sheets in PDB entry 5WS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	31	35	parallel
Strand 3	A	63	68	parallel
Strand 4	A	187	190	parallel
Strand 5	A	215	219	parallel
Strand 6	A	237	241	parallel
Strand 7	A	272	275	parallel
Strand 8	A	306	309	parallel
Strand 9	A	6	11	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	149	151	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	90	94	parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	130	137	anti-parallel
Strand 5	A	121	124	anti-parallel
Strand 6	A	157	158	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	392	396	parallel
Strand 3	A	369	373	parallel
Strand 4	A	444	449	parallel
Strand 5	A	461	466	anti-parallel
Strand 6	C	461	466	anti-parallel
Strand 7	C	444	449	anti-parallel
Strand 8	C	369	373	parallel
Strand 9	C	392	396	parallel
Strand 10	C	411	415	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	31	35	parallel
Strand 3	B	63	68	parallel
Strand 4	B	187	190	parallel
Strand 5	B	215	219	parallel
Strand 6	B	237	241	parallel
Strand 7	B	272	275	parallel
Strand 8	B	306	309	parallel
Strand 9	B	6	11	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	149	151	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	90	94	parallel
Strand 3	B	140	147	anti-parallel
Strand 4	B	130	137	anti-parallel
Strand 5	B	121	124	anti-parallel
Strand 6	B	157	158	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	415	first strand
Strand 2	B	392	396	parallel
Strand 3	B	369	373	parallel
Strand 4	B	444	449	parallel
Strand 5	B	461	466	anti-parallel
Strand 6	D	461	466	anti-parallel
Strand 7	D	444	449	anti-parallel
Strand 8	D	369	373	parallel
Strand 9	D	392	396	parallel
Strand 10	D	411	415	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	31	35	parallel
Strand 3	C	63	68	parallel
Strand 4	C	187	190	parallel
Strand 5	C	215	219	parallel
Strand 6	C	237	241	parallel
Strand 7	C	272	275	parallel
Strand 8	C	306	309	parallel
Strand 9	C	6	11	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	149	151	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	90	94	parallel
Strand 3	C	140	147	anti-parallel
Strand 4	C	130	137	anti-parallel
Strand 5	C	121	124	anti-parallel
Strand 6	C	157	158	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	31	35	parallel
Strand 3	D	63	68	parallel
Strand 4	D	187	190	parallel
Strand 5	D	215	219	parallel
Strand 6	D	237	241	parallel
Strand 7	D	272	275	parallel
Strand 8	D	306	309	parallel
Strand 9	D	6	11	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	149	151	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	90	94	parallel
Strand 3	D	140	147	anti-parallel
Strand 4	D	130	137	anti-parallel
Strand 5	D	121	124	anti-parallel
Strand 6	D	157	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WS8