Analysis of interatomic Contacts of Structural Units in PDB entry:
5WSK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WSK entry

There are 12 chains in PDB entry 5WSK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	THR 200
A	ASP 202	ALA 464
B	LEU 22	THR 200
B	ASP 202	ALA 464
C	TYR 20	THR 200
C	ASP 202	ALA 464
D	LEU 22	THR 200
D	ASP 202	ALA 464
E	MET 48	CYS 169
F	MET 48	CYS 169
H	MET 48	PRO 167
G	MET 478	CYS 122

There are 98 helices in PDB entry 5WSK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	61	Right-handed alpha
Helix 2	AA2	A	69	75	Right-handed 310
Helix 3	AA3	A	76	81	Right-handed 310
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	112	122	Right-handed alpha
Helix 6	AA6	A	123	127	Right-handed 310
Helix 7	AA7	A	141	146	Right-handed alpha
Helix 8	AA8	A	154	163	Right-handed alpha
Helix 9	AA9	A	181	195	Right-handed alpha
Helix 10	AB1	A	213	233	Right-handed alpha
Helix 11	AB2	A	246	261	Right-handed alpha
Helix 12	AB3	A	269	273	Right-handed alpha
Helix 13	AB4	A	273	288	Right-handed alpha
Helix 14	AB5	A	297	303	Right-handed alpha
Helix 15	AB6	A	310	322	Right-handed alpha
Helix 16	AB7	A	338	351	Right-handed alpha
Helix 17	AB8	A	357	361	Right-handed 310
Helix 18	AB9	A	383	385	Right-handed 310
Helix 19	AC1	A	386	395	Right-handed alpha
Helix 20	AC2	A	403	408	Right-handed alpha
Helix 21	AC3	A	412	434	Right-handed alpha
Helix 22	AC4	A	436	450	Right-handed alpha
Helix 23	AC5	A	452	462	Right-handed alpha
Helix 24	AC6	B	49	61	Right-handed alpha
Helix 25	AC7	B	69	75	Right-handed 310
Helix 26	AC8	B	76	81	Right-handed 310
Helix 27	AC9	B	104	108	Right-handed 310
Helix 28	AD1	B	112	122	Right-handed alpha
Helix 29	AD2	B	123	127	Right-handed 310
Helix 30	AD3	B	141	146	Right-handed alpha
Helix 31	AD4	B	154	163	Right-handed alpha
Helix 32	AD5	B	181	195	Right-handed alpha
Helix 33	AD6	B	213	233	Right-handed alpha
Helix 34	AD7	B	246	261	Right-handed alpha
Helix 35	AD8	B	269	273	Right-handed alpha
Helix 36	AD9	B	273	288	Right-handed alpha
Helix 37	AE1	B	297	303	Right-handed alpha
Helix 38	AE2	B	310	322	Right-handed alpha
Helix 39	AE3	B	338	351	Right-handed alpha
Helix 40	AE4	B	357	361	Right-handed 310
Helix 41	AE5	B	383	385	Right-handed 310
Helix 42	AE6	B	386	395	Right-handed alpha
Helix 43	AE7	B	412	433	Right-handed alpha
Helix 44	AE8	B	436	450	Right-handed alpha
Helix 45	AE9	B	452	462	Right-handed alpha
Helix 46	AF1	C	49	61	Right-handed alpha
Helix 47	AF2	C	69	75	Right-handed 310
Helix 48	AF3	C	76	81	Right-handed 310
Helix 49	AF4	C	104	108	Right-handed 310
Helix 50	AF5	C	112	122	Right-handed alpha
Helix 51	AF6	C	123	127	Right-handed 310
Helix 52	AF7	C	141	146	Right-handed alpha
Helix 53	AF8	C	154	163	Right-handed alpha
Helix 54	AF9	C	181	195	Right-handed alpha
Helix 55	AG1	C	213	233	Right-handed alpha
Helix 56	AG2	C	246	261	Right-handed alpha
Helix 57	AG3	C	269	273	Right-handed alpha
Helix 58	AG4	C	273	288	Right-handed alpha
Helix 59	AG5	C	297	303	Right-handed alpha
Helix 60	AG6	C	310	322	Right-handed alpha
Helix 61	AG7	C	338	351	Right-handed alpha
Helix 62	AG8	C	357	361	Right-handed 310
Helix 63	AG9	C	383	385	Right-handed 310
Helix 64	AH1	C	386	395	Right-handed alpha
Helix 65	AH2	C	403	408	Right-handed alpha
Helix 66	AH3	C	412	433	Right-handed alpha
Helix 67	AH4	C	436	450	Right-handed alpha
Helix 68	AH5	C	452	462	Right-handed alpha
Helix 69	AH6	D	49	61	Right-handed alpha
Helix 70	AH7	D	69	75	Right-handed 310
Helix 71	AH8	D	76	81	Right-handed 310
Helix 72	AH9	D	104	108	Right-handed 310
Helix 73	AI1	D	112	122	Right-handed alpha
Helix 74	AI2	D	123	127	Right-handed 310
Helix 75	AI3	D	141	146	Right-handed alpha
Helix 76	AI4	D	154	163	Right-handed alpha
Helix 77	AI5	D	181	195	Right-handed alpha
Helix 78	AI6	D	213	233	Right-handed alpha
Helix 79	AI7	D	246	261	Right-handed alpha
Helix 80	AI8	D	269	273	Right-handed alpha
Helix 81	AI9	D	273	288	Right-handed alpha
Helix 82	AJ1	D	297	303	Right-handed alpha
Helix 83	AJ2	D	310	322	Right-handed alpha
Helix 84	AJ3	D	338	351	Right-handed alpha
Helix 85	AJ4	D	357	361	Right-handed 310
Helix 86	AJ5	D	383	385	Right-handed 310
Helix 87	AJ6	D	386	395	Right-handed alpha
Helix 88	AJ7	D	412	433	Right-handed alpha
Helix 89	AJ8	D	436	452	Right-handed alpha
Helix 90	AJ9	D	452	462	Right-handed alpha
Helix 91	AK1	E	69	83	Right-handed alpha
Helix 92	AK2	E	125	140	Right-handed alpha
Helix 93	AK3	F	69	83	Right-handed alpha
Helix 94	AK4	F	125	140	Right-handed alpha
Helix 95	AK5	H	69	83	Right-handed alpha
Helix 96	AK6	H	125	140	Right-handed alpha
Helix 97	AK7	G	499	513	Right-handed alpha
Helix 98	AK8	G	78	93	Right-handed alpha

There are 16 sheets in PDB entry 5WSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	97	103	anti-parallel
Strand 3	A	36	44	anti-parallel
Strand 4	A	130	139	anti-parallel
Strand 5	A	308	309	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	199	201	parallel
Strand 3	A	237	241	parallel
Strand 4	A	264	268	parallel
Strand 5	A	290	294	parallel
Strand 6	A	325	329	parallel
Strand 7	A	375	378	parallel
Strand 8	A	399	402	parallel
Strand 9	A	169	173	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	366	367	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	36	44	anti-parallel
Strand 4	B	130	139	anti-parallel
Strand 5	B	308	309	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	199	201	parallel
Strand 3	B	237	241	parallel
Strand 4	B	264	268	parallel
Strand 5	B	290	294	parallel
Strand 6	B	325	329	parallel
Strand 7	B	375	379	parallel
Strand 8	B	399	402	parallel
Strand 9	B	169	173	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	366	367	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	36	44	anti-parallel
Strand 4	C	130	139	anti-parallel
Strand 5	C	308	309	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	199	201	parallel
Strand 3	C	237	241	parallel
Strand 4	C	264	268	parallel
Strand 5	C	290	294	parallel
Strand 6	C	325	329	parallel
Strand 7	C	375	378	parallel
Strand 8	C	399	402	parallel
Strand 9	C	169	173	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	366	367	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	36	44	anti-parallel
Strand 4	D	130	139	anti-parallel
Strand 5	D	308	309	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	199	201	parallel
Strand 3	D	237	241	parallel
Strand 4	D	264	268	parallel
Strand 5	D	290	294	parallel
Strand 6	D	325	329	parallel
Strand 7	D	375	379	parallel
Strand 8	D	399	402	parallel
Strand 9	D	169	173	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	366	367	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	86	92	anti-parallel
Strand 3	E	144	151	anti-parallel
Strand 4	E	156	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	116	first strand
Strand 2	F	86	92	anti-parallel
Strand 3	F	144	151	anti-parallel
Strand 4	F	156	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	116	first strand
Strand 2	H	86	92	anti-parallel
Strand 3	H	144	151	anti-parallel
Strand 4	H	156	164	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	516	522	anti-parallel
Strand 3	G	97	104	anti-parallel
Strand 4	G	109	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WSK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WSK