Analysis of interatomic Contacts of Structural Units in PDB entry:
5WSN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WSN entry

There are 6 chains in PDB entry 5WSN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ALA 500
B	SER 1	TYR 74
C	PHE 1	ALA 500
D	SER 1	TYR 74
E	PHE 1	ALA 500
F	SER 1	TYR 74

There are 51 helices in PDB entry 5WSN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	132	135	Right-handed 310
Helix 3	AA3	A	148	154	Right-handed alpha
Helix 4	AA4	A	154	161	Right-handed alpha
Helix 5	AA5	A	192	195	Right-handed 310
Helix 6	AA6	A	215	221	Right-handed alpha
Helix 7	AA7	A	258	266	Right-handed alpha
Helix 8	AA8	A	401	418	Right-handed alpha
Helix 9	AA9	A	421	429	Right-handed 310
Helix 10	AB1	A	433	448	Right-handed alpha
Helix 11	AB2	A	449	452	Right-handed 310
Helix 12	AB3	A	458	474	Right-handed alpha
Helix 13	AB4	A	479	488	Right-handed alpha
Helix 14	AB5	A	491	498	Right-handed alpha
Helix 15	AB6	B	20	39	Right-handed alpha
Helix 16	AB7	B	39	53	Right-handed alpha
Helix 17	AB8	B	57	71	Right-handed alpha
Helix 18	AB9	C	82	87	Right-handed 310
Helix 19	AC1	C	132	135	Right-handed 310
Helix 20	AC2	C	148	154	Right-handed alpha
Helix 21	AC3	C	154	161	Right-handed alpha
Helix 22	AC4	C	192	195	Right-handed 310
Helix 23	AC5	C	215	220	Right-handed alpha
Helix 24	AC6	C	258	266	Right-handed alpha
Helix 25	AC7	C	401	418	Right-handed alpha
Helix 26	AC8	C	421	429	Right-handed 310
Helix 27	AC9	C	433	448	Right-handed alpha
Helix 28	AD1	C	449	452	Right-handed 310
Helix 29	AD2	C	458	474	Right-handed alpha
Helix 30	AD3	C	479	488	Right-handed alpha
Helix 31	AD4	C	491	498	Right-handed alpha
Helix 32	AD5	D	20	39	Right-handed alpha
Helix 33	AD6	D	39	53	Right-handed alpha
Helix 34	AD7	D	57	71	Right-handed alpha
Helix 35	AD8	E	82	87	Right-handed 310
Helix 36	AD9	E	132	135	Right-handed 310
Helix 37	AE1	E	148	154	Right-handed alpha
Helix 38	AE2	E	154	161	Right-handed alpha
Helix 39	AE3	E	192	195	Right-handed 310
Helix 40	AE4	E	215	220	Right-handed alpha
Helix 41	AE5	E	258	266	Right-handed alpha
Helix 42	AE6	E	401	418	Right-handed alpha
Helix 43	AE7	E	421	429	Right-handed 310
Helix 44	AE8	E	433	448	Right-handed alpha
Helix 45	AE9	E	449	452	Right-handed 310
Helix 46	AF1	E	458	474	Right-handed alpha
Helix 47	AF2	E	479	488	Right-handed alpha
Helix 48	AF3	E	491	498	Right-handed alpha
Helix 49	AF4	F	20	39	Right-handed alpha
Helix 50	AF5	F	39	53	Right-handed alpha
Helix 51	AF6	F	57	71	Right-handed alpha

There are 27 sheets in PDB entry 5WSN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	138	143	anti-parallel
Strand 5	A	164	168	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	278	280	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	284	290	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	175	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	112	130	anti-parallel
Strand 3	A	58	73	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	112	130	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	210	214	anti-parallel
Strand 5	A	271	272	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	252	254	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	315	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	368	375	anti-parallel
Strand 4	A	353	354	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	392	394	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	138	143	anti-parallel
Strand 5	C	164	168	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	278	280	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	284	290	anti-parallel
Strand 3	C	185	190	anti-parallel
Strand 4	C	175	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	112	130	anti-parallel
Strand 3	C	58	73	anti-parallel
Strand 4	C	225	226	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	130	anti-parallel
Strand 3	C	201	205	anti-parallel
Strand 4	C	210	214	anti-parallel
Strand 5	C	271	272	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	252	254	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	322	328	anti-parallel
Strand 3	C	315	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	322	328	anti-parallel
Strand 3	C	368	375	anti-parallel
Strand 4	C	353	354	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	138	143	anti-parallel
Strand 5	E	164	168	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	278	280	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	284	290	anti-parallel
Strand 3	E	185	190	anti-parallel
Strand 4	E	175	179	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	112	130	anti-parallel
Strand 3	E	58	73	anti-parallel
Strand 4	E	225	226	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	95	first strand
Strand 2	E	112	130	anti-parallel
Strand 3	E	201	205	anti-parallel
Strand 4	E	210	214	anti-parallel
Strand 5	E	271	272	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	242	first strand
Strand 2	E	252	254	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	310	first strand
Strand 2	E	322	328	anti-parallel
Strand 3	E	315	316	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	310	first strand
Strand 2	E	322	328	anti-parallel
Strand 3	E	368	375	anti-parallel
Strand 4	E	353	354	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	342	first strand
Strand 2	E	382	385	anti-parallel
Strand 3	E	392	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WSN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WSN