Analysis of interatomic Contacts of Structural Units in PDB entry:
5WT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WT3 entry

There are 2 chains in PDB entry 5WT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 332
C
 G 1 C 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5WT3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
44 50Right-handed alpha
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
70 75Right-handed alpha
Helix 5
AA5
A
76 83Right-handed alpha
Helix 6
AA6
A
98 104Right-handed alpha
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
167 169Right-handed 310
Helix 9
AA9
A
170 181Right-handed alpha
Helix 10
AB1
A
195 205Right-handed alpha
Helix 11
AB2
A
215 233Right-handed alpha
Helix 12
AB3
A
243 248Right-handed alpha
Helix 13
AB4
A
267 274Right-handed alpha
Helix 14
AB5
A
288 304Right-handed alpha
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There are 5 sheets in PDB entry 5WT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
31 32anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
121 128parallel
Strand 4
A
135 142anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
155 160anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 241first strand
Strand 2
A
208 213parallel
Strand 3
A
186 189parallel
Strand 4
A
254 260parallel
Strand 5
A
275 286parallel
Strand 6
A
322 331anti-parallel
Strand 7
A
308 309anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 241first strand
Strand 2
A
208 213parallel
Strand 3
A
186 189parallel
Strand 4
A
254 260parallel
Strand 5
A
275 286parallel
Strand 6
A
322 331anti-parallel
Strand 7
A
312 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il