Analysis of interatomic Contacts of Structural Units in PDB entry:
5WT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WT4 entry

There is 1 chain in PDB entry 5WT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5WT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
44 59Right-handed alpha
Helix 4
AA4
A
72 89Right-handed alpha
Helix 5
AA5
A
104 117Right-handed alpha
Helix 6
AA6
A
133 141Right-handed alpha
Helix 7
AA7
A
162 174Right-handed alpha
Helix 8
AA8
A
191 196Right-handed alpha
Helix 9
AA9
A
205 207Right-handed 310
Helix 10
AB1
A
243 260Right-handed alpha
Helix 11
AB2
A
260 267Right-handed alpha
Helix 12
AB3
A
267 280Right-handed alpha
Helix 13
AB4
A
307 318Right-handed alpha
Helix 14
AB5
A
362 382Right-handed alpha
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There are 3 sheets in PDB entry 5WT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
320 321parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
176 180parallel
Strand 5
A
145 149parallel
Strand 6
A
96 100parallel
Strand 7
A
120 124parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
353 356anti-parallel
Strand 4
A
323 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il