Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WTA entry

There are 4 chains in PDB entry 5WTA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 272	SER 586
B	SER 272	SER 586
C	ASN 273	SER 586
D	ASN 273	SER 586

There are 20 helices in PDB entry 5WTA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	277	Right-handed 310
Helix 2	AA2	A	292	295	Right-handed 310
Helix 3	AA3	A	370	375	Right-handed alpha
Helix 4	AA4	A	508	512	Right-handed 310
Helix 5	AA5	A	516	520	Right-handed 310
Helix 6	AA6	B	275	277	Right-handed 310
Helix 7	AA7	B	292	295	Right-handed 310
Helix 8	AA8	B	370	375	Right-handed alpha
Helix 9	AA9	B	508	512	Right-handed 310
Helix 10	AB1	B	516	520	Right-handed 310
Helix 11	AB2	C	275	277	Right-handed 310
Helix 12	AB3	C	292	297	Right-handed 310
Helix 13	AB4	C	370	375	Right-handed alpha
Helix 14	AB5	C	508	512	Right-handed 310
Helix 15	AB6	C	516	520	Right-handed 310
Helix 16	AB7	D	275	277	Right-handed 310
Helix 17	AB8	D	292	295	Right-handed 310
Helix 18	AB9	D	370	375	Right-handed alpha
Helix 19	AC1	D	508	512	Right-handed 310
Helix 20	AC2	D	516	520	Right-handed 310

There are 18 sheets in PDB entry 5WTA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	290	first strand
Strand 2	A	302	312	anti-parallel
Strand 3	A	378	388	anti-parallel
Strand 4	A	330	331	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	574	585	anti-parallel
Strand 3	A	558	568	anti-parallel
Strand 4	A	456	464	anti-parallel
Strand 5	A	529	537	anti-parallel
Strand 6	A	523	526	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	351	358	anti-parallel
Strand 3	A	363	368	anti-parallel
Strand 4	A	321	325	anti-parallel
Strand 5	A	398	405	anti-parallel
Strand 6	A	408	415	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	427	437	anti-parallel
Strand 3	A	442	449	anti-parallel
Strand 4	A	541	548	anti-parallel
Strand 5	A	488	493	anti-parallel
Strand 6	A	513	514	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	474	475	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	290	first strand
Strand 2	B	302	312	anti-parallel
Strand 3	B	378	388	anti-parallel
Strand 4	B	330	331	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	574	585	anti-parallel
Strand 3	B	558	568	anti-parallel
Strand 4	B	456	464	anti-parallel
Strand 5	B	529	537	anti-parallel
Strand 6	B	523	525	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	351	358	anti-parallel
Strand 3	B	363	368	anti-parallel
Strand 4	B	321	325	anti-parallel
Strand 5	B	397	405	anti-parallel
Strand 6	B	408	416	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	427	437	anti-parallel
Strand 3	B	442	449	anti-parallel
Strand 4	B	541	548	anti-parallel
Strand 5	B	488	493	anti-parallel
Strand 6	B	513	514	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	290	first strand
Strand 2	C	302	312	anti-parallel
Strand 3	C	379	388	anti-parallel
Strand 4	C	330	331	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	574	584	anti-parallel
Strand 3	C	558	568	anti-parallel
Strand 4	C	456	464	anti-parallel
Strand 5	C	529	537	anti-parallel
Strand 6	C	523	526	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	351	358	anti-parallel
Strand 3	C	363	368	anti-parallel
Strand 4	C	321	325	anti-parallel
Strand 5	C	397	405	anti-parallel
Strand 6	C	408	416	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	424	first strand
Strand 2	C	427	437	anti-parallel
Strand 3	C	442	449	anti-parallel
Strand 4	C	541	548	anti-parallel
Strand 5	C	488	493	anti-parallel
Strand 6	C	513	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	290	first strand
Strand 2	D	302	312	anti-parallel
Strand 3	D	378	388	anti-parallel
Strand 4	D	330	331	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	299	first strand
Strand 2	D	574	585	anti-parallel
Strand 3	D	558	568	anti-parallel
Strand 4	D	456	464	anti-parallel
Strand 5	D	529	537	anti-parallel
Strand 6	D	523	525	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	351	358	anti-parallel
Strand 3	D	363	368	anti-parallel
Strand 4	D	321	325	anti-parallel
Strand 5	D	397	405	anti-parallel
Strand 6	D	408	416	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	427	437	anti-parallel
Strand 3	D	442	449	anti-parallel
Strand 4	D	541	548	anti-parallel
Strand 5	D	488	493	anti-parallel
Strand 6	D	513	514	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	474	475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WTA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTA