Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WTB entry

There are 8 chains in PDB entry 5WTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASN 273	PRO 598
A	ASN 273	PRO 598
B	ASN 273	PRO 598
C	ASN 273	PRO 598
E	ARG 1206	LYS 1222
F	ARG 1206	TRP 1219
G	ARG 1206	TRP 1219
H	ARG 1206	LYS 1222

There are 17 helices in PDB entry 5WTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	275	277	Right-handed 310
Helix 2	AA2	D	297	301	Right-handed 310
Helix 3	AA3	D	370	374	Right-handed alpha
Helix 4	AA4	D	517	521	Right-handed 310
Helix 5	AA5	A	275	277	Right-handed 310
Helix 6	AA6	A	297	301	Right-handed 310
Helix 7	AA7	A	370	374	Right-handed alpha
Helix 8	AA8	A	516	521	Right-handed 310
Helix 9	AA9	B	275	277	Right-handed 310
Helix 10	AB1	B	297	301	Right-handed 310
Helix 11	AB2	B	370	374	Right-handed alpha
Helix 12	AB3	B	508	512	Right-handed 310
Helix 13	AB4	B	515	521	Right-handed alpha
Helix 14	AB5	C	275	277	Right-handed 310
Helix 15	AB6	C	299	301	Right-handed 310
Helix 16	AB7	C	370	374	Right-handed alpha
Helix 17	AB8	C	516	519	Right-handed 310

There are 27 sheets in PDB entry 5WTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	286	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	378	383	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	408	416	parallel
Strand 3	D	397	405	anti-parallel
Strand 4	D	321	325	anti-parallel
Strand 5	D	363	368	anti-parallel
Strand 6	D	351	358	anti-parallel
Strand 7	D	344	345	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	331	first strand
Strand 2	D	387	388	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	376	first strand
Strand 2	D	595	596	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	427	437	anti-parallel
Strand 3	D	442	449	anti-parallel
Strand 4	D	540	549	anti-parallel
Strand 5	D	481	482	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	427	437	anti-parallel
Strand 3	D	442	449	anti-parallel
Strand 4	D	540	549	anti-parallel
Strand 5	D	488	494	anti-parallel
Strand 6	D	513	514	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	529	537	anti-parallel
Strand 3	D	456	465	anti-parallel
Strand 4	D	560	568	anti-parallel
Strand 5	D	574	585	anti-parallel
Strand 6	H	1207	1209	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	529	537	anti-parallel
Strand 3	D	456	465	anti-parallel
Strand 4	D	560	568	anti-parallel
Strand 5	D	574	585	anti-parallel
Strand 6	H	1212	1218	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	287	first strand
Strand 2	A	305	312	anti-parallel
Strand 3	A	375	384	anti-parallel
Strand 4	A	591	596	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	408	416	parallel
Strand 3	A	397	405	anti-parallel
Strand 4	A	321	325	anti-parallel
Strand 5	A	363	368	anti-parallel
Strand 6	A	351	354	anti-parallel
Strand 7	A	344	345	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	408	416	parallel
Strand 3	A	397	405	anti-parallel
Strand 4	A	321	325	anti-parallel
Strand 5	A	363	368	anti-parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	387	388	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	427	437	anti-parallel
Strand 3	A	442	449	anti-parallel
Strand 4	A	541	548	anti-parallel
Strand 5	A	488	493	anti-parallel
Strand 6	A	513	514	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	529	537	anti-parallel
Strand 3	A	456	464	anti-parallel
Strand 4	A	561	568	anti-parallel
Strand 5	A	574	581	anti-parallel
Strand 6	E	1212	1219	anti-parallel
Strand 7	F	1216	1218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	585	first strand
Strand 2	E	1207	1209	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	288	first strand
Strand 2	B	304	312	anti-parallel
Strand 3	B	375	383	anti-parallel
Strand 4	B	589	596	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	408	416	parallel
Strand 3	B	397	405	anti-parallel
Strand 4	B	321	325	anti-parallel
Strand 5	B	363	368	anti-parallel
Strand 6	B	351	358	anti-parallel
Strand 7	B	344	345	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	387	388	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	427	437	anti-parallel
Strand 3	B	442	449	anti-parallel
Strand 4	B	540	548	anti-parallel
Strand 5	B	488	494	anti-parallel
Strand 6	B	513	514	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	529	537	anti-parallel
Strand 3	B	456	464	anti-parallel
Strand 4	B	560	567	anti-parallel
Strand 5	B	575	585	anti-parallel
Strand 6	F	1207	1210	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	474	475	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	288	first strand
Strand 2	C	304	312	anti-parallel
Strand 3	C	375	384	anti-parallel
Strand 4	C	589	596	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	408	417	parallel
Strand 3	C	397	405	anti-parallel
Strand 4	C	321	325	anti-parallel
Strand 5	C	363	368	anti-parallel
Strand 6	C	351	358	anti-parallel
Strand 7	C	344	345	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	387	388	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	424	first strand
Strand 2	C	427	437	anti-parallel
Strand 3	C	442	449	anti-parallel
Strand 4	C	540	548	anti-parallel
Strand 5	C	491	494	anti-parallel
Strand 6	C	513	514	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	525	first strand
Strand 2	C	529	537	anti-parallel
Strand 3	C	456	464	anti-parallel
Strand 4	C	560	568	anti-parallel
Strand 5	C	574	585	anti-parallel
Strand 6	G	1207	1211	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	474	475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTB