Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WTE entry

There are 3 chains in PDB entry 5WTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 272
B
 GLU 5THR 221
C
 MET 1GLN 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5WTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 50Right-handed 310
Helix 2
AA2
A
84 89Right-handed alpha
Helix 3
AA3
A
124 131Right-handed alpha
Helix 4
AA4
A
178 185Right-handed alpha
Helix 5
AA5
A
216 224Right-handed alpha
Helix 6
AA6
B
52 57Right-handed alpha
Helix 7
AA7
B
83 88Right-handed alpha
Helix 8
AA8
B
94 99Right-handed alpha
Helix 9
AA9
B
138 144Right-handed 310
Helix 10
AB1
C
19 24Right-handed alpha
Helix 11
AB2
C
30 34Right-handed 310
Helix 12
AB3
C
40 44Right-handed 310
Helix 13
AB4
C
51 56Right-handed alpha
Helix 14
AB5
C
99 106Right-handed alpha
Helix 15
AB6
C
148 153Right-handed alpha
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There are 10 sheets in PDB entry 5WTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
C
168 173anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
219 236anti-parallel
Strand 5
C
59 67anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
C
168 173anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
182 183anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 100first strand
Strand 2
A
243 251anti-parallel
Strand 3
A
141 149anti-parallel
Strand 4
A
197 202anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
105 112anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
188 191anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
256 260anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
24 26anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
199 216anti-parallel
Strand 3
B
101 114anti-parallel
Strand 4
B
156 161anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
B
180 191anti-parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
146 150anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
200 211anti-parallel
Strand 3
C
128 137anti-parallel
Strand 4
C
157 161anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 90first strand
Strand 2
C
95 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il