Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WTF entry

There are 3 chains in PDB entry 5WTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 49THR 272
B
 ALA 19THR 221
C
 MET 1GLN 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
84 89Right-handed alpha
Helix 3
AA3
A
124 131Right-handed alpha
Helix 4
AA4
A
178 185Right-handed alpha
Helix 5
AA5
B
52 57Right-handed alpha
Helix 6
AA6
B
82 88Right-handed alpha
Helix 7
AA7
B
94 100Right-handed alpha
Helix 8
AA8
C
19 24Right-handed alpha
Helix 9
AA9
C
30 34Right-handed 310
Helix 10
AB1
C
40 44Right-handed 310
Helix 11
AB2
C
51 56Right-handed alpha
Helix 12
AB3
C
99 106Right-handed alpha
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There are 9 sheets in PDB entry 5WTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
C
168 172anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
222 236anti-parallel
Strand 5
C
59 64anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
C
168 172anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
182 183anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
244 251anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
197 202anti-parallel
Strand 5
C
27 28parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
187 191anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
256 260anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
199 216anti-parallel
Strand 3
B
101 114anti-parallel
Strand 4
B
156 161anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
199 216anti-parallel
Strand 3
B
101 114anti-parallel
Strand 4
B
170 171anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
180 191anti-parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
146 150anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
200 206anti-parallel
Strand 3
C
130 137anti-parallel
Strand 4
C
157 161anti-parallel
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