Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WTH entry

There are 5 chains in PDB entry 5WTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 272
B
 GLU 5THR 221
C
 MET 1GLN 246
D
 ASP 1CYS 212
E
 GLU 1ARG 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5WTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 52Right-handed 310
Helix 2
AA2
A
57 63Right-handed alpha
Helix 3
AA3
A
84 91Right-handed alpha
Helix 4
AA4
A
124 132Right-handed alpha
Helix 5
AA5
A
178 184Right-handed alpha
Helix 6
AA6
A
218 222Right-handed 310
Helix 7
AA7
A
265 269Right-handed 310
Helix 8
AA8
B
83 88Right-handed alpha
Helix 9
AA9
B
94 100Right-handed alpha
Helix 10
AB1
B
137 144Right-handed 310
Helix 11
AB2
B
218 221Right-handed 310
Helix 12
AB3
C
19 24Right-handed alpha
Helix 13
AB4
C
30 34Right-handed 310
Helix 14
AB5
C
51 57Right-handed alpha
Helix 15
AB6
C
99 106Right-handed alpha
Helix 16
AB7
C
149 154Right-handed alpha
Helix 17
AB8
D
78 82Right-handed 310
Helix 18
AB9
D
119 124Right-handed alpha
Helix 19
AC1
D
181 186Right-handed alpha
Helix 20
AC2
E
87 91Right-handed 310
Helix 21
AC3
E
164 166Right-handed 310
Helix 22
AC4
E
167 169Right-handed 310
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There are 21 sheets in PDB entry 5WTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
244 250anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
197 202anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
187 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
256 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
23 26anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
202 216anti-parallel
Strand 3
B
101 114anti-parallel
Strand 4
B
156 161anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
202 216anti-parallel
Strand 3
B
101 114anti-parallel
Strand 4
B
170 171anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
180 191anti-parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
146 150anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 64first strand
Strand 2
C
222 236anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
168 173anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 64first strand
Strand 2
C
222 236anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
182 183anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 80first strand
Strand 2
C
200 206anti-parallel
Strand 3
C
130 137anti-parallel
Strand 4
C
157 161anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
69 74anti-parallel
Strand 4
D
61 66anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 104parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 47first strand
Strand 2
D
33 37anti-parallel
Strand 3
D
84 89anti-parallel
Strand 4
D
95 96anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 116first strand
Strand 2
D
127 137anti-parallel
Strand 3
D
171 180anti-parallel
Strand 4
D
157 161anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 153first strand
Strand 2
D
143 148anti-parallel
Strand 3
D
189 195anti-parallel
Strand 4
D
205 208anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 101anti-parallel
Strand 4
E
34 40anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
58 59anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 101anti-parallel
Strand 4
E
106 111anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 132first strand
Strand 2
E
147 153anti-parallel
Strand 3
E
182 192anti-parallel
Strand 4
E
143 145anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 132first strand
Strand 2
E
147 153anti-parallel
Strand 3
E
182 192anti-parallel
Strand 4
E
171 179anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 162first strand
Strand 2
E
202 207anti-parallel
Strand 3
E
212 217anti-parallel
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