Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WTP entry

There are 3 chains in PDB entry 5WTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 331ILE 454
B
 PHE 334ILE 454
C
 GLU 333ILE 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5WTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 349Right-handed alpha
Helix 2
AA2
A
363 376Right-handed alpha
Helix 3
AA3
A
394 416Right-handed alpha
Helix 4
AA4
A
419 421Right-handed 310
Helix 5
AA5
A
439 447Right-handed alpha
Helix 6
AA6
B
337 349Right-handed alpha
Helix 7
AA7
B
361 363Right-handed 310
Helix 8
AA8
B
364 376Right-handed alpha
Helix 9
AA9
B
394 416Right-handed alpha
Helix 10
AB1
B
419 421Right-handed 310
Helix 11
AB2
B
439 447Right-handed alpha
Helix 12
AB3
C
337 349Right-handed alpha
Helix 13
AB4
C
361 363Right-handed 310
Helix 14
AB5
C
364 378Right-handed alpha
Helix 15
AB6
C
394 416Right-handed alpha
Helix 16
AB7
C
419 421Right-handed 310
Helix 17
AB8
C
439 447Right-handed alpha
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There are 3 sheets in PDB entry 5WTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 429first strand
Strand 2
A
382 388parallel
Strand 3
A
448 454anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 427first strand
Strand 2
B
383 388parallel
Strand 3
B
448 453anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
423 429first strand
Strand 2
C
382 388parallel
Strand 3
C
448 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il