Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WTQ entry

There are 4 chains in PDB entry 5WTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10PHE 123
B
 VAL 12PHE 123
C
 ASP 11PHE 123
D
 VAL 12PHE 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 88Right-handed alpha
Helix 2
AA2
A
101 119Right-handed alpha
Helix 3
AA3
A
120 123Right-handed 310
Helix 4
AA4
B
74 88Right-handed alpha
Helix 5
AA5
B
101 119Right-handed alpha
Helix 6
AA6
B
120 123Right-handed 310
Helix 7
AA7
C
74 88Right-handed alpha
Helix 8
AA8
C
103 119Right-handed alpha
Helix 9
AA9
C
120 123Right-handed 310
Helix 10
AB1
D
74 88Right-handed alpha
Helix 11
AB2
D
101 119Right-handed alpha
Helix 12
AB3
D
120 123Right-handed 310
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There are 4 sheets in PDB entry 5WTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
24 32anti-parallel
Strand 3
A
36 42anti-parallel
Strand 4
B
90 95parallel
Strand 5
B
50 54anti-parallel
Strand 6
B
63 66anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
B
36 42parallel
Strand 5
B
24 32anti-parallel
Strand 6
B
13 21anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 21first strand
Strand 2
C
24 32anti-parallel
Strand 3
C
36 42anti-parallel
Strand 4
D
90 95parallel
Strand 5
D
50 54anti-parallel
Strand 6
D
63 66anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
50 53anti-parallel
Strand 3
C
90 95anti-parallel
Strand 4
D
36 42parallel
Strand 5
D
24 32anti-parallel
Strand 6
D
13 21anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il