Analysis of interatomic Contacts of Structural Units in PDB entry:
5WU4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WU4 entry

There are 2 chains in PDB entry 5WU4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 145HIS 877
B
 ASP 145HIS 877
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 5WU4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
147 155Right-handed alpha
Helix 2
AA2
A
158 171Right-handed alpha
Helix 3
AA3
A
173 195Right-handed alpha
Helix 4
AA4
A
204 207Right-handed 310
Helix 5
AA5
A
331 351Right-handed alpha
Helix 6
AA6
A
387 403Right-handed alpha
Helix 7
AA7
A
405 420Right-handed alpha
Helix 8
AA8
A
430 444Right-handed alpha
Helix 9
AA9
A
452 460Right-handed alpha
Helix 10
AB1
A
490 505Right-handed alpha
Helix 11
AB2
A
525 531Right-handed alpha
Helix 12
AB3
A
556 575Right-handed alpha
Helix 13
AB4
A
576 581Right-handed alpha
Helix 14
AB5
A
591 596Right-handed alpha
Helix 15
AB6
A
599 607Right-handed alpha
Helix 16
AB7
A
615 629Right-handed alpha
Helix 17
AB8
A
777 792Right-handed alpha
Helix 18
AB9
A
804 813Right-handed alpha
Helix 19
AC1
A
854 875Right-handed alpha
Helix 20
AC2
B
147 155Right-handed alpha
Helix 21
AC3
B
158 171Right-handed alpha
Helix 22
AC4
B
173 195Right-handed alpha
Helix 23
AC5
B
204 207Right-handed 310
Helix 24
AC6
B
331 351Right-handed alpha
Helix 25
AC7
B
387 403Right-handed alpha
Helix 26
AC8
B
405 420Right-handed alpha
Helix 27
AC9
B
430 444Right-handed alpha
Helix 28
AD1
B
452 460Right-handed alpha
Helix 29
AD2
B
490 505Right-handed alpha
Helix 30
AD3
B
526 530Right-handed 310
Helix 31
AD4
B
556 575Right-handed alpha
Helix 32
AD5
B
576 581Right-handed alpha
Helix 33
AD6
B
590 596Right-handed alpha
Helix 34
AD7
B
599 607Right-handed alpha
Helix 35
AD8
B
615 629Right-handed alpha
Helix 36
AD9
B
777 789Right-handed alpha
Helix 37
AE1
B
804 813Right-handed alpha
Helix 38
AE2
B
854 875Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5WU4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
378 383parallel
Strand 4
A
368 373anti-parallel
Strand 5
A
355 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
471 472anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
510 513anti-parallel
Strand 3
A
540 542parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 610first strand
Strand 2
A
842 849anti-parallel
Strand 3
A
830 836anti-parallel
Strand 4
A
764 770anti-parallel
Strand 5
A
634 636anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
378 383parallel
Strand 4
B
368 373anti-parallel
Strand 5
B
355 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 468first strand
Strand 2
B
471 472anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
510 513anti-parallel
Strand 3
B
540 542parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 610first strand
Strand 2
B
842 849anti-parallel
Strand 3
B
830 836anti-parallel
Strand 4
B
764 770anti-parallel
Strand 5
B
634 636anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il