Analysis of interatomic Contacts of Structural Units in PDB entry:
5WU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WU5 entry

There are 3 chains in PDB entry 5WU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 145	GLU 876
B	ASP 145	GLU 876
C	ASP 145	TYR 579

There are 73 helices in PDB entry 5WU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	145	154	Right-handed alpha
Helix 2	AA2	A	158	171	Right-handed alpha
Helix 3	AA3	A	173	195	Right-handed alpha
Helix 4	AA4	A	204	207	Right-handed 310
Helix 5	AA5	A	338	351	Right-handed alpha
Helix 6	AA6	A	387	403	Right-handed alpha
Helix 7	AA7	A	405	421	Right-handed alpha
Helix 8	AA8	A	430	444	Right-handed alpha
Helix 9	AA9	A	452	460	Right-handed alpha
Helix 10	AB1	A	478	482	Right-handed 310
Helix 11	AB2	A	490	505	Right-handed alpha
Helix 12	AB3	A	556	575	Right-handed alpha
Helix 13	AB4	A	576	581	Right-handed alpha
Helix 14	AB5	A	591	596	Right-handed alpha
Helix 15	AB6	A	599	607	Right-handed alpha
Helix 16	AB7	A	615	629	Right-handed alpha
Helix 17	AB8	A	777	792	Right-handed alpha
Helix 18	AB9	A	804	816	Right-handed alpha
Helix 19	AC1	A	854	875	Right-handed alpha
Helix 20	AC2	B	146	154	Right-handed alpha
Helix 21	AC3	B	158	171	Right-handed alpha
Helix 22	AC4	B	173	195	Right-handed alpha
Helix 23	AC5	B	336	351	Right-handed alpha
Helix 24	AC6	B	387	403	Right-handed alpha
Helix 25	AC7	B	405	420	Right-handed alpha
Helix 26	AC8	B	430	444	Right-handed alpha
Helix 27	AC9	B	452	460	Right-handed alpha
Helix 28	AD1	B	490	505	Right-handed alpha
Helix 29	AD2	B	556	575	Right-handed alpha
Helix 30	AD3	B	576	581	Right-handed alpha
Helix 31	AD4	B	591	596	Right-handed alpha
Helix 32	AD5	B	599	607	Right-handed alpha
Helix 33	AD6	B	615	629	Right-handed alpha
Helix 34	AD7	B	777	792	Right-handed alpha
Helix 35	AD8	B	804	813	Right-handed alpha
Helix 36	AD9	B	854	875	Right-handed alpha
Helix 37	AE1	C	146	155	Right-handed alpha
Helix 38	AE2	C	158	171	Right-handed alpha
Helix 39	AE3	C	173	195	Right-handed alpha
Helix 40	AE4	C	204	207	Right-handed 310
Helix 41	AE5	C	336	351	Right-handed alpha
Helix 42	AE6	C	387	403	Right-handed alpha
Helix 43	AE7	C	405	421	Right-handed alpha
Helix 44	AE8	C	430	444	Right-handed alpha
Helix 45	AE9	C	452	460	Right-handed alpha
Helix 46	AF1	C	490	505	Right-handed alpha
Helix 47	AF2	C	526	530	Right-handed 310
Helix 48	AF3	C	556	575	Right-handed alpha
Helix 49	AF4	C	576	581	Right-handed alpha
Helix 50	AF5	C	591	596	Right-handed alpha
Helix 51	AF6	C	599	607	Right-handed alpha
Helix 52	AF7	C	615	629	Right-handed alpha
Helix 53	AF8	C	777	792	Right-handed alpha
Helix 54	AF9	C	804	813	Right-handed alpha
Helix 55	AG1	C	854	875	Right-handed alpha
Helix 56	AG2	D	146	155	Right-handed alpha
Helix 57	AG3	D	158	171	Right-handed alpha
Helix 58	AG4	D	173	195	Right-handed alpha
Helix 59	AG5	D	332	351	Right-handed alpha
Helix 60	AG6	D	387	403	Right-handed alpha
Helix 61	AG7	D	405	420	Right-handed alpha
Helix 62	AG8	D	430	444	Right-handed alpha
Helix 63	AG9	D	452	460	Right-handed alpha
Helix 64	AH1	D	478	482	Right-handed 310
Helix 65	AH2	D	490	505	Right-handed alpha
Helix 66	AH3	D	556	575	Right-handed alpha
Helix 67	AH4	D	576	581	Right-handed alpha
Helix 68	AH5	D	591	596	Right-handed alpha
Helix 69	AH6	D	599	607	Right-handed alpha
Helix 70	AH7	D	615	629	Right-handed alpha
Helix 71	AH8	D	777	792	Right-handed alpha
Helix 72	AH9	D	804	813	Right-handed alpha
Helix 73	AI1	D	854	875	Right-handed alpha

There are 16 sheets in PDB entry 5WU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	378	383	parallel
Strand 4	A	368	373	anti-parallel
Strand 5	A	355	361	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	471	472	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	521	first strand
Strand 2	A	510	513	anti-parallel
Strand 3	A	540	542	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	610	first strand
Strand 2	A	842	849	anti-parallel
Strand 3	A	830	836	anti-parallel
Strand 4	A	764	770	anti-parallel
Strand 5	A	634	636	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	203	first strand
Strand 2	B	217	222	anti-parallel
Strand 3	B	378	383	parallel
Strand 4	B	368	373	anti-parallel
Strand 5	B	355	361	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	471	472	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	521	first strand
Strand 2	B	510	513	anti-parallel
Strand 3	B	540	542	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	610	first strand
Strand 2	B	842	849	anti-parallel
Strand 3	B	830	836	anti-parallel
Strand 4	B	764	770	anti-parallel
Strand 5	B	634	636	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	218	222	anti-parallel
Strand 3	C	378	383	parallel
Strand 4	C	368	373	anti-parallel
Strand 5	C	355	361	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	471	472	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	521	first strand
Strand 2	C	510	513	anti-parallel
Strand 3	C	540	542	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	609	610	first strand
Strand 2	C	842	849	anti-parallel
Strand 3	C	830	836	anti-parallel
Strand 4	C	764	770	anti-parallel
Strand 5	C	634	636	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	218	222	anti-parallel
Strand 3	D	378	383	parallel
Strand 4	D	368	373	anti-parallel
Strand 5	D	355	361	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	471	472	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	521	first strand
Strand 2	D	510	513	anti-parallel
Strand 3	D	540	542	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	609	610	first strand
Strand 2	D	842	849	anti-parallel
Strand 3	D	830	836	anti-parallel
Strand 4	D	764	770	anti-parallel
Strand 5	D	634	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WU5