Analysis of interatomic Contacts of Structural Units in PDB entry:
5WVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WVM entry

There is 1 chain in PDB entry 5WVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ASP 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5WVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
70 75Right-handed alpha
Helix 4
AA4
A
84 90Right-handed alpha
Helix 5
AA5
A
92 98Right-handed alpha
Helix 6
AA6
A
133 144Right-handed alpha
Helix 7
AA7
A
155 166Right-handed alpha
Helix 8
AA8
A
187 203Right-handed alpha
Helix 9
AA9
A
211 220Right-handed alpha
Helix 10
AB1
A
230 232Right-handed 310
Helix 11
AB2
A
233 239Right-handed alpha
Helix 12
AB3
A
274 285Right-handed alpha
Helix 13
AB4
A
288 299Right-handed alpha
Helix 14
AB5
A
306 314Right-handed alpha
Helix 15
AB6
A
316 329Right-handed alpha
Helix 16
AB7
A
337 354Right-handed alpha
Helix 17
AB8
A
358 401Right-handed alpha
Helix 18
AB9
A
412 428Right-handed alpha
Helix 19
AC1
A
482 486Right-handed 310
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There are 6 sheets in PDB entry 5WVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
8 12parallel
Strand 3
A
61 64parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
303 304anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
8 12parallel
Strand 3
A
61 64parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
330 331parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
224 229parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
244 247anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
492 493parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
443 446anti-parallel
Strand 3
A
474 479anti-parallel
Strand 4
A
465 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il