Analysis of interatomic Contacts of Structural Units in PDB entry:
5WVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WVP entry

There is 1 chain in PDB entry 5WVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27ILE 955
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5WVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
94 102Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
144 155Right-handed alpha
Helix 7
AA7
A
182 196Right-handed alpha
Helix 8
AA8
A
211 220Right-handed 310
Helix 9
AA9
A
235 245Right-handed alpha
Helix 10
AB1
A
261 265Right-handed 310
Helix 11
AB2
A
267 271Right-handed 310
Helix 12
AB3
A
286 294Right-handed alpha
Helix 13
AB4
A
323 326Right-handed 310
Helix 14
AB5
A
390 393Right-handed 310
Helix 15
AB6
A
484 493Right-handed alpha
Helix 16
AB7
A
506 512Right-handed alpha
Helix 17
AB8
A
516 522Right-handed alpha
Helix 18
AB9
A
525 533Right-handed alpha
Helix 19
AC1
A
555 560Right-handed alpha
Helix 20
AC2
A
588 595Right-handed alpha
Helix 21
AC3
A
597 615Right-handed alpha
Helix 22
AC4
A
635 639Right-handed 310
Helix 23
AC5
A
643 662Right-handed alpha
Helix 24
AC6
A
687 694Right-handed alpha
Helix 25
AC7
A
696 705Right-handed alpha
Helix 26
AC8
A
726 731Right-handed alpha
Helix 27
AC9
A
765 773Right-handed alpha
Helix 28
AD1
A
784 788Right-handed 310
Helix 29
AD2
A
793 800Right-handed alpha
Helix 30
AD3
A
804 821Right-handed alpha
Helix 31
AD4
A
822 826Right-handed 310
Helix 32
AD5
A
845 850Right-handed 310
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There are 14 sheets in PDB entry 5WVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
199 204parallel
Strand 4
A
157 163parallel
Strand 5
A
65 69parallel
Strand 6
A
106 107parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
298 300anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
683 685parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 321first strand
Strand 2
A
328 337anti-parallel
Strand 3
A
380 388anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 371first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
412 419anti-parallel
Strand 4
A
425 430anti-parallel
Strand 5
A
433 434anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 371first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
412 419anti-parallel
Strand 4
A
436 438anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
406 409anti-parallel
Strand 3
A
442 446anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
471 477anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
777 780parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
565 570anti-parallel
Strand 3
A
619 621parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 670first strand
Strand 2
A
710 713parallel
Strand 3
A
743 745parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
721 722anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 838first strand
Strand 2
A
922 931parallel
Strand 3
A
880 889anti-parallel
Strand 4
A
948 955anti-parallel
Strand 5
A
863 866anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 857first strand
Strand 2
A
871 876parallel
Strand 3
A
934 944anti-parallel
Strand 4
A
898 904anti-parallel
Strand 5
A
907 914anti-parallel
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