Analysis of interatomic Contacts of Structural Units in PDB entry:
5WVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WVR entry

There is 1 chain in PDB entry 5WVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 807PHE 1240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5WVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
808 821Right-handed alpha
Helix 2
AA2
A
846 852Right-handed alpha
Helix 3
AA3
A
858 862Right-handed 310
Helix 4
AA4
A
865 867Right-handed 310
Helix 5
AA5
A
874 880Right-handed alpha
Helix 6
AA6
A
881 884Right-handed 310
Helix 7
AA7
A
885 893Right-handed alpha
Helix 8
AA8
A
896 911Right-handed alpha
Helix 9
AA9
A
912 916Right-handed 310
Helix 10
AB1
A
1131 1135Right-handed 310
Helix 11
AB2
A
1136 1141Right-handed alpha
Helix 12
AB3
A
1149 1153Right-handed 310
Helix 13
AB4
A
1157 1160Right-handed 310
Helix 14
AB5
A
1161 1169Right-handed alpha
Helix 15
AB6
A
1171 1196Right-handed alpha
Helix 16
AB7
A
1223 1230Right-handed alpha
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There are 4 sheets in PDB entry 5WVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 873first strand
Strand 2
A
921 923parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 934first strand
Strand 2
A
941 948anti-parallel
Strand 3
A
953 959anti-parallel
Strand 4
A
963 975anti-parallel
Strand 5
A
980 984anti-parallel
Strand 6
A
1009 1013anti-parallel
Strand 7
A
1021 1032anti-parallel
Strand 8
A
1038 1043anti-parallel
Strand 9
A
1055 1061anti-parallel
Strand 10
A
1067 1074anti-parallel
Strand 11
A
1078 1083anti-parallel
Strand 12
A
1119 1124anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 934first strand
Strand 2
A
941 948anti-parallel
Strand 3
A
953 959anti-parallel
Strand 4
A
963 975anti-parallel
Strand 5
A
988 992anti-parallel
Strand 6
A
1001 1005anti-parallel
Strand 7
A
1021 1032anti-parallel
Strand 8
A
1038 1043anti-parallel
Strand 9
A
1055 1061anti-parallel
Strand 10
A
1067 1074anti-parallel
Strand 11
A
1078 1083anti-parallel
Strand 12
A
1119 1124anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1209first strand
Strand 2
A
1216 1220anti-parallel
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