Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WWF entry

There are 4 chains in PDB entry 5WWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 16MET 193
B
 A 1 C 10
C
 LYS 17GLU 192
D
 A 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5WWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 20Right-handed 310
Helix 2
AA2
A
33 43Right-handed alpha
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
124 133Right-handed alpha
Helix 6
AA6
A
134 136Right-handed 310
Helix 7
AA7
A
162 170Right-handed alpha
Helix 8
AA8
C
17 20Right-handed 310
Helix 9
AA9
C
33 42Right-handed alpha
Helix 10
AB1
C
71 81Right-handed alpha
Helix 11
AB2
C
98 102Right-handed 310
Helix 12
AB3
C
124 133Right-handed alpha
Helix 13
AB4
C
163 172Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5WWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
22 26anti-parallel
Strand 4
A
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
89 90anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 145first strand
Strand 2
A
152 160anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
180 186anti-parallel
Strand 5
A
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 54first strand
Strand 2
C
61 69anti-parallel
Strand 3
C
22 26anti-parallel
Strand 4
C
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
89 90anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 145first strand
Strand 2
C
152 160anti-parallel
Strand 3
C
113 117anti-parallel
Strand 4
C
180 186anti-parallel
Strand 5
C
174 177anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il