Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WWP entry

There are 2 chains in PDB entry 5WWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 0	LYS 596
A	PRO 0	GLN 598

There are 41 helices in PDB entry 5WWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	26	36	Right-handed alpha
Helix 2	AA2	B	102	112	Right-handed alpha
Helix 3	AA3	B	116	126	Right-handed alpha
Helix 4	AA4	B	127	147	Right-handed alpha
Helix 5	AA5	B	261	264	Right-handed 310
Helix 6	AA6	B	265	272	Right-handed alpha
Helix 7	AA7	B	287	299	Right-handed alpha
Helix 8	AA8	B	310	323	Right-handed alpha
Helix 9	AA9	B	326	328	Right-handed 310
Helix 10	AB1	B	376	379	Right-handed 310
Helix 11	AB2	B	380	390	Right-handed alpha
Helix 12	AB3	B	418	422	Right-handed 310
Helix 13	AB4	B	423	432	Right-handed alpha
Helix 14	AB5	B	445	454	Right-handed alpha
Helix 15	AB6	B	489	502	Right-handed alpha
Helix 16	AB7	B	504	508	Right-handed 310
Helix 17	AB8	B	515	526	Right-handed alpha
Helix 18	AB9	B	533	537	Right-handed 310
Helix 19	AC1	B	552	557	Right-handed alpha
Helix 20	AC2	B	557	566	Right-handed alpha
Helix 21	AC3	B	578	583	Right-handed alpha
Helix 22	AC4	A	26	35	Right-handed alpha
Helix 23	AC5	A	102	112	Right-handed alpha
Helix 24	AC6	A	116	123	Right-handed alpha
Helix 25	AC7	A	127	146	Right-handed alpha
Helix 26	AC8	A	262	264	Right-handed 310
Helix 27	AC9	A	265	272	Right-handed alpha
Helix 28	AD1	A	287	299	Right-handed alpha
Helix 29	AD2	A	310	325	Right-handed alpha
Helix 30	AD3	A	326	328	Right-handed 310
Helix 31	AD4	A	375	379	Right-handed 310
Helix 32	AD5	A	380	390	Right-handed alpha
Helix 33	AD6	A	418	422	Right-handed 310
Helix 34	AD7	A	423	433	Right-handed alpha
Helix 35	AD8	A	445	456	Right-handed alpha
Helix 36	AD9	A	489	503	Right-handed alpha
Helix 37	AE1	A	504	508	Right-handed 310
Helix 38	AE2	A	515	526	Right-handed alpha
Helix 39	AE3	A	533	537	Right-handed alpha
Helix 40	AE4	A	557	566	Right-handed alpha
Helix 41	AE5	A	578	584	Right-handed alpha

There are 17 sheets in PDB entry 5WWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	11	12	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	14	16	anti-parallel
Strand 3	B	42	43	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	64	66	anti-parallel
Strand 3	B	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	88	89	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	159	first strand
Strand 2	B	162	167	anti-parallel
Strand 3	B	209	213	anti-parallel
Strand 4	B	197	202	anti-parallel
Strand 5	B	182	184	anti-parallel
Strand 6	B	224	227	anti-parallel
Strand 7	B	152	159	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	330	333	parallel
Strand 3	B	355	359	parallel
Strand 4	B	304	308	parallel
Strand 5	B	366	374	parallel
Strand 6	B	391	400	parallel
Strand 7	B	277	281	parallel
Strand 8	B	436	437	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	462	463	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	510	512	parallel
Strand 3	B	541	547	parallel
Strand 4	B	568	575	parallel
Strand 5	B	471	474	parallel
Strand 6	B	588	589	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	11	12	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	14	16	anti-parallel
Strand 3	A	42	43	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	64	66	anti-parallel
Strand 3	A	81	82	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	88	89	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	330	333	parallel
Strand 3	A	355	359	parallel
Strand 4	A	304	308	parallel
Strand 5	A	370	373	parallel
Strand 6	A	396	400	parallel
Strand 7	A	277	281	parallel
Strand 8	A	436	437	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	368	first strand
Strand 2	A	391	393	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	462	463	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	532	first strand
Strand 2	A	510	513	parallel
Strand 3	A	541	547	parallel
Strand 4	A	568	576	parallel
Strand 5	A	471	475	parallel
Strand 6	A	588	589	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	482	first strand
Strand 2	A	487	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWP