Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WWV entry

There are 8 chains in PDB entry 5WWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 339
B	MET 1	LEU 339
C	MET 1	LEU 339
D	MET 1	LEU 339
E	MET 1	ASN 338
F	MET 1	ASN 338
G	MET 1	ASN 338
H	MET 1	ARG 337

There are 93 helices in PDB entry 5WWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	24	Right-handed alpha
Helix 2	AA2	A	61	79	Right-handed alpha
Helix 3	AA3	A	118	124	Right-handed alpha
Helix 4	AA4	A	140	155	Right-handed alpha
Helix 5	AA5	A	166	173	Right-handed alpha
Helix 6	AA6	A	182	189	Right-handed 310
Helix 7	AA7	A	252	267	Right-handed alpha
Helix 8	AA8	A	268	273	Right-handed 310
Helix 9	AA9	A	311	313	Right-handed 310
Helix 10	AB1	A	314	336	Right-handed alpha
Helix 11	AB2	B	9	23	Right-handed alpha
Helix 12	AB3	B	43	48	Right-handed alpha
Helix 13	AB4	B	62	79	Right-handed alpha
Helix 14	AB5	B	83	87	Right-handed 310
Helix 15	AB6	B	120	125	Right-handed alpha
Helix 16	AB7	B	140	154	Right-handed alpha
Helix 17	AB8	B	166	172	Right-handed alpha
Helix 18	AB9	B	182	184	Right-handed 310
Helix 19	AC1	B	185	190	Right-handed alpha
Helix 20	AC2	B	252	267	Right-handed alpha
Helix 21	AC3	B	268	273	Right-handed 310
Helix 22	AC4	B	314	337	Right-handed alpha
Helix 23	AC5	C	9	24	Right-handed alpha
Helix 24	AC6	C	62	78	Right-handed alpha
Helix 25	AC7	C	83	88	Right-handed alpha
Helix 26	AC8	C	105	109	Right-handed 310
Helix 27	AC9	C	118	125	Right-handed alpha
Helix 28	AD1	C	140	155	Right-handed alpha
Helix 29	AD2	C	167	172	Right-handed alpha
Helix 30	AD3	C	182	189	Right-handed 310
Helix 31	AD4	C	252	267	Right-handed alpha
Helix 32	AD5	C	268	273	Right-handed 310
Helix 33	AD6	C	314	336	Right-handed alpha
Helix 34	AD7	D	9	23	Right-handed alpha
Helix 35	AD8	D	43	48	Right-handed alpha
Helix 36	AD9	D	61	79	Right-handed alpha
Helix 37	AE1	D	120	124	Right-handed 310
Helix 38	AE2	D	140	154	Right-handed alpha
Helix 39	AE3	D	167	172	Right-handed alpha
Helix 40	AE4	D	182	189	Right-handed 310
Helix 41	AE5	D	252	267	Right-handed alpha
Helix 42	AE6	D	268	273	Right-handed 310
Helix 43	AE7	D	314	337	Right-handed alpha
Helix 44	AE8	E	9	24	Right-handed alpha
Helix 45	AE9	E	43	48	Right-handed alpha
Helix 46	AF1	E	61	79	Right-handed alpha
Helix 47	AF2	E	83	87	Right-handed 310
Helix 48	AF3	E	119	124	Right-handed 310
Helix 49	AF4	E	140	155	Right-handed alpha
Helix 50	AF5	E	166	172	Right-handed alpha
Helix 51	AF6	E	182	189	Right-handed 310
Helix 52	AF7	E	219	221	Right-handed 310
Helix 53	AF8	E	252	267	Right-handed alpha
Helix 54	AF9	E	268	273	Right-handed 310
Helix 55	AG1	E	314	338	Right-handed alpha
Helix 56	AG2	F	9	23	Right-handed alpha
Helix 57	AG3	F	43	48	Right-handed alpha
Helix 58	AG4	F	61	77	Right-handed alpha
Helix 59	AG5	F	81	87	Right-handed 310
Helix 60	AG6	F	105	110	Right-handed 310
Helix 61	AG7	F	118	123	Right-handed alpha
Helix 62	AG8	F	140	155	Right-handed alpha
Helix 63	AG9	F	166	172	Right-handed alpha
Helix 64	AH1	F	182	189	Right-handed 310
Helix 65	AH2	F	218	222	Right-handed 310
Helix 66	AH3	F	252	267	Right-handed alpha
Helix 67	AH4	F	268	273	Right-handed 310
Helix 68	AH5	F	314	336	Right-handed alpha
Helix 69	AH6	G	10	24	Right-handed alpha
Helix 70	AH7	G	43	48	Right-handed alpha
Helix 71	AH8	G	62	77	Right-handed alpha
Helix 72	AH9	G	120	124	Right-handed 310
Helix 73	AI1	G	140	155	Right-handed alpha
Helix 74	AI2	G	166	173	Right-handed alpha
Helix 75	AI3	G	182	184	Right-handed 310
Helix 76	AI4	G	185	190	Right-handed alpha
Helix 77	AI5	G	252	267	Right-handed alpha
Helix 78	AI6	G	268	273	Right-handed 310
Helix 79	AI7	G	311	313	Right-handed 310
Helix 80	AI8	G	314	338	Right-handed alpha
Helix 81	AI9	H	9	24	Right-handed alpha
Helix 82	AJ1	H	43	48	Right-handed alpha
Helix 83	AJ2	H	61	79	Right-handed alpha
Helix 84	AJ3	H	83	87	Right-handed 310
Helix 85	AJ4	H	118	124	Right-handed alpha
Helix 86	AJ5	H	140	155	Right-handed alpha
Helix 87	AJ6	H	166	172	Right-handed alpha
Helix 88	AJ7	H	182	184	Right-handed 310
Helix 89	AJ8	H	185	190	Right-handed alpha
Helix 90	AJ9	H	218	222	Right-handed 310
Helix 91	AK1	H	252	267	Right-handed alpha
Helix 92	AK2	H	268	273	Right-handed 310
Helix 93	AK3	H	314	332	Right-handed alpha

There are 24 sheets in PDB entry 5WWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	31	36	parallel
Strand 3	A	2	6	parallel
Strand 4	A	177	180	parallel
Strand 5	A	301	309	parallel
Strand 6	A	290	298	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	212	217	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	243	244	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	212	217	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	274	285	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	31	36	parallel
Strand 3	B	2	6	parallel
Strand 4	B	177	180	parallel
Strand 5	B	301	307	parallel
Strand 6	B	293	298	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	212	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	243	244	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	212	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	274	285	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	31	36	parallel
Strand 3	C	2	6	parallel
Strand 4	C	177	180	parallel
Strand 5	C	302	307	parallel
Strand 6	C	293	297	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	213	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	238	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	243	244	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	213	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	238	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	274	285	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	31	36	parallel
Strand 3	D	2	6	parallel
Strand 4	D	177	180	parallel
Strand 5	D	302	307	parallel
Strand 6	D	293	297	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	89	98	anti-parallel
Strand 4	D	213	217	parallel
Strand 5	D	228	231	anti-parallel
Strand 6	D	236	239	anti-parallel
Strand 7	D	196	206	anti-parallel
Strand 8	D	243	244	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	89	98	anti-parallel
Strand 4	D	213	217	parallel
Strand 5	D	228	231	anti-parallel
Strand 6	D	236	239	anti-parallel
Strand 7	D	196	206	anti-parallel
Strand 8	D	274	285	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	31	36	parallel
Strand 3	E	2	6	parallel
Strand 4	E	177	180	parallel
Strand 5	E	301	307	parallel
Strand 6	E	293	298	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	116	first strand
Strand 2	E	130	139	anti-parallel
Strand 3	E	89	98	anti-parallel
Strand 4	E	213	217	parallel
Strand 5	E	223	231	anti-parallel
Strand 6	E	236	239	anti-parallel
Strand 7	E	196	206	anti-parallel
Strand 8	E	242	244	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	116	first strand
Strand 2	E	130	139	anti-parallel
Strand 3	E	89	98	anti-parallel
Strand 4	E	213	217	parallel
Strand 5	E	223	231	anti-parallel
Strand 6	E	236	239	anti-parallel
Strand 7	E	196	206	anti-parallel
Strand 8	E	274	285	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	31	36	parallel
Strand 3	F	2	6	parallel
Strand 4	F	177	180	parallel
Strand 5	F	301	307	parallel
Strand 6	F	293	298	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	116	first strand
Strand 2	F	130	139	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	213	216	parallel
Strand 5	F	228	231	anti-parallel
Strand 6	F	236	239	anti-parallel
Strand 7	F	196	206	anti-parallel
Strand 8	F	243	244	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	116	first strand
Strand 2	F	130	139	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	213	216	parallel
Strand 5	F	228	231	anti-parallel
Strand 6	F	236	239	anti-parallel
Strand 7	F	196	206	anti-parallel
Strand 8	F	274	285	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	31	36	parallel
Strand 3	G	2	6	parallel
Strand 4	G	177	180	parallel
Strand 5	G	301	309	parallel
Strand 6	G	290	298	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	116	first strand
Strand 2	G	130	139	anti-parallel
Strand 3	G	89	98	anti-parallel
Strand 4	G	214	217	parallel
Strand 5	G	228	231	anti-parallel
Strand 6	G	236	239	anti-parallel
Strand 7	G	201	206	anti-parallel
Strand 8	G	274	280	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	243	244	first strand
Strand 2	G	196	199	anti-parallel
Strand 3	G	283	285	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	31	36	parallel
Strand 3	H	2	6	parallel
Strand 4	H	177	180	parallel
Strand 5	H	302	307	parallel
Strand 6	H	293	297	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	116	first strand
Strand 2	H	130	139	anti-parallel
Strand 3	H	89	98	anti-parallel
Strand 4	H	213	216	parallel
Strand 5	H	228	231	anti-parallel
Strand 6	H	236	239	anti-parallel
Strand 7	H	196	206	anti-parallel
Strand 8	H	243	244	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	116	first strand
Strand 2	H	130	139	anti-parallel
Strand 3	H	89	98	anti-parallel
Strand 4	H	213	216	parallel
Strand 5	H	228	231	anti-parallel
Strand 6	H	236	239	anti-parallel
Strand 7	H	196	206	anti-parallel
Strand 8	H	274	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWV