Analysis of interatomic Contacts of Structural Units in PDB entry:
5WX1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WX1 entry

There is 1 chain in PDB entry 5WX1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -38LEU 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5WX1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-19 -15Right-handed 310
Helix 2
AA2
A
18 19Right-handed 310
Helix 3
AA3
A
22 22Right-handed 310
Helix 4
AA4
A
23 27Right-handed alpha
Helix 5
AA5
A
67 72Right-handed alpha
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
209 216Right-handed alpha
Helix 8
AA8
A
234 245Right-handed alpha
Helix 9
AA9
A
256 271Right-handed alpha
Helix 10
AB1
A
297 302Right-handed alpha
Helix 11
AB2
A
304 314Right-handed alpha
Helix 12
AB3
A
322 326Right-handed 310
Helix 13
AB4
A
327 339Right-handed alpha
Helix 14
AB5
A
340 343Right-handed 310
Helix 15
AB6
A
395 399Right-handed 310
Helix 16
AB7
A
407 421Right-handed alpha
Helix 17
AB8
A
433 436Right-handed 310
Helix 18
AB9
A
437 442Right-handed alpha
Helix 19
AC1
A
452 455Right-handed 310
Helix 20
AC2
A
496 505Right-handed alpha
Helix 21
AC3
A
528 536Right-handed alpha
Helix 22
AC4
A
537 540Right-handed 310
Helix 23
AC5
A
545 558Right-handed alpha
Helix 24
AC6
A
563 578Right-handed alpha
Helix 25
AC7
A
583 593Right-handed alpha
Helix 26
AC8
A
598 605Right-handed alpha
Helix 27
AC9
A
649 658Right-handed alpha
Helix 28
AD1
A
667 678Right-handed alpha
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There are 9 sheets in PDB entry 5WX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 13first strand
Strand 2
A
-34 -22anti-parallel
Strand 3
A
76 80parallel
Strand 4
A
83 87anti-parallel
Strand 5
A
34 35parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 13first strand
Strand 2
A
-34 -22anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
53 60anti-parallel
Strand 5
A
63 66anti-parallel
Strand 6
A
98 102anti-parallel
Strand 7
A
91 93anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
166 169anti-parallel
Strand 3
A
114 123anti-parallel
Strand 4
A
129 137anti-parallel
Strand 5
A
142 145anti-parallel
Strand 6
A
191 193anti-parallel
Strand 7
A
181 183anti-parallel
Strand 8
A
680 682anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
345 350parallel
Strand 3
A
317 320parallel
Strand 4
A
249 254parallel
Strand 5
A
291 296parallel
Strand 6
A
276 279parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 370first strand
Strand 2
A
513 517parallel
Strand 3
A
465 468parallel
Strand 4
A
401 404parallel
Strand 5
A
446 450parallel
Strand 6
A
424 428parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
390 393anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 479first strand
Strand 2
A
486 494anti-parallel
Strand 3
A
646 648parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
635 636parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 618first strand
Strand 2
A
621 626anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il