Analysis of interatomic Contacts of Structural Units in PDB entry:
5WX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WX8 entry

There are 4 chains in PDB entry 5WX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1334SER 1498
B
 LYS 1334SER 1498
C
 LYS 1334SER 1498
D
 LYS 1334SER 1498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5WX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1334 1346Right-handed alpha
Helix 2
AA2
A
1363 1377Right-handed alpha
Helix 3
AA3
A
1398 1410Right-handed alpha
Helix 4
AA4
A
1411 1420Right-handed alpha
Helix 5
AA5
A
1444 1462Right-handed alpha
Helix 6
AA6
A
1480 1482Right-handed 310
Helix 7
AA7
A
1483 1496Right-handed alpha
Helix 8
AA8
B
1335 1345Right-handed alpha
Helix 9
AA9
B
1361 1377Right-handed alpha
Helix 10
AB1
B
1398 1410Right-handed alpha
Helix 11
AB2
B
1412 1420Right-handed alpha
Helix 12
AB3
B
1444 1461Right-handed alpha
Helix 13
AB4
B
1480 1482Right-handed 310
Helix 14
AB5
B
1483 1498Right-handed alpha
Helix 15
AB6
C
1335 1346Right-handed alpha
Helix 16
AB7
C
1361 1376Right-handed alpha
Helix 17
AB8
C
1398 1410Right-handed alpha
Helix 18
AB9
C
1411 1420Right-handed alpha
Helix 19
AC1
C
1444 1462Right-handed alpha
Helix 20
AC2
C
1480 1482Right-handed 310
Helix 21
AC3
C
1483 1497Right-handed alpha
Helix 22
AC4
D
1335 1345Right-handed alpha
Helix 23
AC5
D
1361 1377Right-handed alpha
Helix 24
AC6
D
1398 1410Right-handed alpha
Helix 25
AC7
D
1412 1420Right-handed alpha
Helix 26
AC8
D
1444 1462Right-handed alpha
Helix 27
AC9
D
1480 1482Right-handed 310
Helix 28
AD1
D
1483 1497Right-handed alpha
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There are 2 sheets in PDB entry 5WX8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1431 1432first strand
Strand 2
A
1389 1391anti-parallel
Strand 3
B
1381 1384anti-parallel
Strand 4
B
1436 1442anti-parallel
Strand 5
B
1352 1358anti-parallel
Strand 6
B
1466 1473anti-parallel
Strand 7
A
1466 1474anti-parallel
Strand 8
A
1352 1358anti-parallel
Strand 9
A
1436 1442anti-parallel
Strand 10
A
1381 1384anti-parallel
Strand 11
B
1389 1391anti-parallel
Strand 12
B
1431 1432anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1431 1432first strand
Strand 2
C
1389 1391anti-parallel
Strand 3
D
1381 1384anti-parallel
Strand 4
D
1436 1442anti-parallel
Strand 5
D
1352 1358anti-parallel
Strand 6
D
1466 1473anti-parallel
Strand 7
C
1466 1473anti-parallel
Strand 8
C
1352 1358anti-parallel
Strand 9
C
1436 1442anti-parallel
Strand 10
C
1381 1384anti-parallel
Strand 11
D
1389 1391anti-parallel
Strand 12
D
1431 1432anti-parallel
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