Analysis of interatomic Contacts of Structural Units in PDB entry:
5WXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WXL entry

There are 4 chains in PDB entry 5WXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19LYS 251
B
 GLY 16PRO 106
C
 ASN 26LYS 251
D
 GLY 16PRO 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5WXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 54Right-handed alpha
Helix 2
AA2
A
72 83Right-handed alpha
Helix 3
AA3
A
124 128Right-handed 310
Helix 4
AA4
A
146 151Right-handed alpha
Helix 5
AA5
A
151 166Right-handed alpha
Helix 6
AA6
A
176 178Right-handed 310
Helix 7
AA7
A
241 249Right-handed alpha
Helix 8
AA8
B
23 25Right-handed 310
Helix 9
AA9
B
35 40Right-handed alpha
Helix 10
AB1
B
45 66Right-handed alpha
Helix 11
AB2
C
39 52Right-handed alpha
Helix 12
AB3
C
72 83Right-handed alpha
Helix 13
AB4
C
124 128Right-handed 310
Helix 14
AB5
C
146 151Right-handed alpha
Helix 15
AB6
C
151 166Right-handed alpha
Helix 16
AB7
C
176 178Right-handed 310
Helix 17
AB8
C
241 249Right-handed alpha
Helix 18
AB9
D
23 25Right-handed 310
Helix 19
AC1
D
35 40Right-handed alpha
Helix 20
AC2
D
45 67Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5WXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
30 34parallel
Strand 3
A
86 91parallel
Strand 4
A
99 106anti-parallel
Strand 5
A
109 118anti-parallel
Strand 6
A
230 238anti-parallel
Strand 7
A
199 209anti-parallel
Strand 8
A
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
30 34parallel
Strand 3
A
86 91parallel
Strand 4
A
99 106anti-parallel
Strand 5
A
109 118anti-parallel
Strand 6
A
230 238anti-parallel
Strand 7
A
199 209anti-parallel
Strand 8
A
180 186anti-parallel
Strand 9
A
140 144parallel
Strand 10
B
27 30parallel
Strand 11
B
20 22anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
B
89 91anti-parallel
Strand 3
B
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
30 34parallel
Strand 3
C
86 91parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
109 118anti-parallel
Strand 6
C
230 238anti-parallel
Strand 7
C
199 206anti-parallel
Strand 8
C
223 225anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
30 34parallel
Strand 3
C
86 91parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
109 118anti-parallel
Strand 6
C
230 238anti-parallel
Strand 7
C
199 206anti-parallel
Strand 8
C
180 186anti-parallel
Strand 9
C
140 144parallel
Strand 10
D
27 30parallel
Strand 11
D
20 22anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
D
89 91anti-parallel
Strand 3
D
70 71anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il