Analysis of interatomic Contacts of Structural Units in PDB entry:
5WXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WXM entry

There are 4 chains in PDB entry 5WXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 28ASP 162
U
 GLY 428VAL 454
B
 ARG 28VAL 161
V
 GLY 428LYS 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5WXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 36Right-handed alpha
Helix 2
AA2
A
40 63Right-handed alpha
Helix 3
AA3
A
68 85Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
96 101Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
110 118Right-handed alpha
Helix 8
AA8
A
123 133Right-handed alpha
Helix 9
AA9
U
429 452Right-handed alpha
Helix 10
AB1
B
29 37Right-handed alpha
Helix 11
AB2
B
41 63Right-handed alpha
Helix 12
AB3
B
68 85Right-handed alpha
Helix 13
AB4
B
93 101Right-handed alpha
Helix 14
AB5
B
102 108Right-handed alpha
Helix 15
AB6
B
110 118Right-handed alpha
Helix 16
AB7
B
123 133Right-handed alpha
Helix 17
AB8
B
154 156Right-handed 310
Helix 18
AB9
V
430 452Right-handed alpha
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There are 2 sheets in PDB entry 5WXM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
136 138anti-parallel
Strand 3
A
158 160anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
136 138anti-parallel
Strand 3
B
158 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il