Analysis of interatomic Contacts of Structural Units in PDB entry:
5WXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WXU entry

There are 6 chains in PDB entry 5WXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	GLU 461
B	SER 27	LEU 462
C	SER 27	GLU 461
D	SER 27	GLU 461
E	SER 27	GLU 461
F	SER 27	LEU 462

There are 56 helices in PDB entry 5WXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	79	Right-handed alpha
Helix 2	AA2	A	141	145	Right-handed 310
Helix 3	AA3	A	230	239	Right-handed alpha
Helix 4	AA4	A	241	250	Right-handed alpha
Helix 5	AA5	A	285	293	Right-handed 310
Helix 6	AA6	A	301	305	Right-handed 310
Helix 7	AA7	A	324	330	Right-handed alpha
Helix 8	AA8	A	424	429	Right-handed alpha
Helix 9	AA9	A	430	439	Right-handed alpha
Helix 10	AB1	A	441	451	Right-handed alpha
Helix 11	AB2	B	72	79	Right-handed alpha
Helix 12	AB3	B	141	145	Right-handed 310
Helix 13	AB4	B	230	239	Right-handed alpha
Helix 14	AB5	B	241	249	Right-handed alpha
Helix 15	AB6	B	285	293	Right-handed 310
Helix 16	AB7	B	301	305	Right-handed 310
Helix 17	AB8	B	324	330	Right-handed alpha
Helix 18	AB9	B	424	429	Right-handed alpha
Helix 19	AC1	B	430	439	Right-handed alpha
Helix 20	AC2	B	441	451	Right-handed alpha
Helix 21	AC3	C	72	79	Right-handed alpha
Helix 22	AC4	C	230	239	Right-handed alpha
Helix 23	AC5	C	241	250	Right-handed alpha
Helix 24	AC6	C	285	293	Right-handed 310
Helix 25	AC7	C	301	305	Right-handed 310
Helix 26	AC8	C	324	330	Right-handed alpha
Helix 27	AC9	C	424	429	Right-handed alpha
Helix 28	AD1	C	430	439	Right-handed alpha
Helix 29	AD2	C	441	451	Right-handed alpha
Helix 30	AD3	D	72	79	Right-handed alpha
Helix 31	AD4	D	230	239	Right-handed alpha
Helix 32	AD5	D	241	250	Right-handed alpha
Helix 33	AD6	D	285	293	Right-handed 310
Helix 34	AD7	D	301	305	Right-handed 310
Helix 35	AD8	D	324	330	Right-handed alpha
Helix 36	AD9	D	424	429	Right-handed alpha
Helix 37	AE1	D	430	439	Right-handed alpha
Helix 38	AE2	D	441	451	Right-handed alpha
Helix 39	AE3	E	72	79	Right-handed alpha
Helix 40	AE4	E	230	239	Right-handed alpha
Helix 41	AE5	E	241	249	Right-handed alpha
Helix 42	AE6	E	285	293	Right-handed 310
Helix 43	AE7	E	301	305	Right-handed 310
Helix 44	AE8	E	324	330	Right-handed alpha
Helix 45	AE9	E	424	429	Right-handed alpha
Helix 46	AF1	E	430	439	Right-handed alpha
Helix 47	AF2	E	441	451	Right-handed alpha
Helix 48	AF3	F	72	79	Right-handed alpha
Helix 49	AF4	F	230	239	Right-handed alpha
Helix 50	AF5	F	241	250	Right-handed alpha
Helix 51	AF6	F	285	293	Right-handed 310
Helix 52	AF7	F	301	305	Right-handed 310
Helix 53	AF8	F	324	330	Right-handed alpha
Helix 54	AF9	F	424	429	Right-handed alpha
Helix 55	AG1	F	430	439	Right-handed alpha
Helix 56	AG2	F	441	451	Right-handed alpha

There are 36 sheets in PDB entry 5WXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	63	67	anti-parallel
Strand 3	A	80	87	anti-parallel
Strand 4	A	178	185	anti-parallel
Strand 5	A	102	108	anti-parallel
Strand 6	A	158	162	anti-parallel
Strand 7	A	296	298	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	A	91	98	anti-parallel
Strand 5	A	198	201	anti-parallel
Strand 6	A	221	224	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	A	91	98	anti-parallel
Strand 5	A	258	260	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	124	126	anti-parallel
Strand 3	F	307	309	parallel
Strand 4	F	313	318	anti-parallel
Strand 5	F	332	338	anti-parallel
Strand 6	F	393	409	anti-parallel
Strand 7	F	354	368	anti-parallel
Strand 8	F	376	381	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	124	126	anti-parallel
Strand 3	F	307	309	parallel
Strand 4	F	313	318	anti-parallel
Strand 5	F	332	338	anti-parallel
Strand 6	F	393	409	anti-parallel
Strand 7	F	343	349	anti-parallel
Strand 8	F	457	458	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	388	first strand
Strand 2	F	354	368	anti-parallel
Strand 3	F	393	409	anti-parallel
Strand 4	F	343	349	anti-parallel
Strand 5	F	416	418	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	148	first strand
Strand 2	F	124	126	anti-parallel
Strand 3	A	307	309	parallel
Strand 4	A	313	318	anti-parallel
Strand 5	A	332	338	anti-parallel
Strand 6	A	393	409	anti-parallel
Strand 7	A	343	349	anti-parallel
Strand 8	A	416	418	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	343	349	anti-parallel
Strand 3	A	393	409	anti-parallel
Strand 4	A	354	368	anti-parallel
Strand 5	A	385	388	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	381	first strand
Strand 2	A	354	368	anti-parallel
Strand 3	A	385	388	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	80	87	anti-parallel
Strand 4	B	178	185	anti-parallel
Strand 5	B	102	108	anti-parallel
Strand 6	B	158	162	anti-parallel
Strand 7	B	296	298	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	168	172	anti-parallel
Strand 4	B	91	98	anti-parallel
Strand 5	B	198	201	anti-parallel
Strand 6	B	221	224	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	168	172	anti-parallel
Strand 4	B	91	98	anti-parallel
Strand 5	B	258	260	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	124	126	anti-parallel
Strand 3	D	307	309	parallel
Strand 4	D	313	318	anti-parallel
Strand 5	D	332	338	anti-parallel
Strand 6	D	393	409	anti-parallel
Strand 7	D	354	368	anti-parallel
Strand 8	D	376	381	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	124	126	anti-parallel
Strand 3	D	307	309	parallel
Strand 4	D	313	318	anti-parallel
Strand 5	D	332	338	anti-parallel
Strand 6	D	393	409	anti-parallel
Strand 7	D	343	349	anti-parallel
Strand 8	D	457	458	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	388	first strand
Strand 2	D	354	368	anti-parallel
Strand 3	D	393	409	anti-parallel
Strand 4	D	343	349	anti-parallel
Strand 5	D	416	418	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	124	126	anti-parallel
Strand 3	B	307	309	parallel
Strand 4	B	313	318	anti-parallel
Strand 5	B	332	338	anti-parallel
Strand 6	B	393	409	anti-parallel
Strand 7	B	343	349	anti-parallel
Strand 8	B	416	418	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	393	409	anti-parallel
Strand 4	B	354	368	anti-parallel
Strand 5	B	385	388	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	381	first strand
Strand 2	B	354	368	anti-parallel
Strand 3	B	385	388	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	63	67	anti-parallel
Strand 3	C	80	87	anti-parallel
Strand 4	C	178	185	anti-parallel
Strand 5	C	102	108	anti-parallel
Strand 6	C	158	162	anti-parallel
Strand 7	C	296	298	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	155	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	168	172	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	198	201	anti-parallel
Strand 6	C	221	224	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	155	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	168	172	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	258	260	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	124	126	anti-parallel
Strand 3	E	307	309	parallel
Strand 4	E	313	318	anti-parallel
Strand 5	E	332	338	anti-parallel
Strand 6	E	393	409	anti-parallel
Strand 7	E	354	368	anti-parallel
Strand 8	E	376	381	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	124	126	anti-parallel
Strand 3	E	307	309	parallel
Strand 4	E	313	318	anti-parallel
Strand 5	E	332	338	anti-parallel
Strand 6	E	393	409	anti-parallel
Strand 7	E	343	349	anti-parallel
Strand 8	E	457	458	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	388	first strand
Strand 2	E	354	368	anti-parallel
Strand 3	E	393	409	anti-parallel
Strand 4	E	343	349	anti-parallel
Strand 5	E	416	418	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	124	126	anti-parallel
Strand 3	C	307	309	parallel
Strand 4	C	313	318	anti-parallel
Strand 5	C	332	338	anti-parallel
Strand 6	C	393	409	anti-parallel
Strand 7	C	343	349	anti-parallel
Strand 8	C	416	418	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	343	349	anti-parallel
Strand 3	C	393	409	anti-parallel
Strand 4	C	354	368	anti-parallel
Strand 5	C	385	388	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	381	first strand
Strand 2	C	354	368	anti-parallel
Strand 3	C	385	388	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	63	67	anti-parallel
Strand 3	D	80	87	anti-parallel
Strand 4	D	178	185	anti-parallel
Strand 5	D	102	108	anti-parallel
Strand 6	D	158	162	anti-parallel
Strand 7	D	296	298	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	110	115	anti-parallel
Strand 3	D	168	172	anti-parallel
Strand 4	D	91	98	anti-parallel
Strand 5	D	198	201	anti-parallel
Strand 6	D	221	224	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	110	115	anti-parallel
Strand 3	D	168	172	anti-parallel
Strand 4	D	91	98	anti-parallel
Strand 5	D	258	260	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	63	67	anti-parallel
Strand 3	E	80	87	anti-parallel
Strand 4	E	178	185	anti-parallel
Strand 5	E	102	108	anti-parallel
Strand 6	E	158	162	anti-parallel
Strand 7	E	296	298	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	155	first strand
Strand 2	E	110	115	anti-parallel
Strand 3	E	168	172	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	198	201	anti-parallel
Strand 6	E	221	224	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	155	first strand
Strand 2	E	110	115	anti-parallel
Strand 3	E	168	172	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	258	260	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	60	first strand
Strand 2	F	63	67	anti-parallel
Strand 3	F	80	87	anti-parallel
Strand 4	F	178	185	anti-parallel
Strand 5	F	102	108	anti-parallel
Strand 6	F	158	162	anti-parallel
Strand 7	F	296	298	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	155	first strand
Strand 2	F	110	115	anti-parallel
Strand 3	F	168	171	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	198	201	anti-parallel
Strand 6	F	221	224	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	155	first strand
Strand 2	F	110	115	anti-parallel
Strand 3	F	168	171	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	258	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WXU