Analysis of interatomic Contacts of Structural Units in PDB entry:
5WY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WY5 entry

There are 2 chains in PDB entry 5WY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 78ARG 294
A
 GLY 9GLU 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5WY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
81 103Right-handed alpha
Helix 2
AA2
B
108 115Right-handed alpha
Helix 3
AA3
B
116 121Right-handed 310
Helix 4
AA4
B
122 139Right-handed alpha
Helix 5
AA5
B
173 189Right-handed alpha
Helix 6
AA6
B
194 205Right-handed alpha
Helix 7
AA7
B
220 231Right-handed alpha
Helix 8
AA8
B
251 256Right-handed alpha
Helix 9
AA9
B
259 272Right-handed alpha
Helix 10
AB1
B
277 294Right-handed alpha
Helix 11
AB2
A
12 25Right-handed alpha
Helix 12
AB3
A
30 44Right-handed alpha
Helix 13
AB4
A
52 65Right-handed alpha
Helix 14
AB5
A
94 99Right-handed alpha
Helix 15
AB6
A
102 119Right-handed alpha
Helix 16
AB7
A
126 131Right-handed alpha
Helix 17
AB8
A
132 134Right-handed 310
Helix 18
AB9
A
142 156Right-handed alpha
Helix 19
AC1
A
169 184Right-handed alpha
Helix 20
AC2
A
212 220Right-handed alpha
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There are 5 sheets in PDB entry 5WY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
151 156anti-parallel
Strand 3
B
140 144anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
248 249anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
69 75anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
159 162anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
210 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il