Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WYB entry

There is 1 chain in PDB entry 5WYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 9GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
41 57Right-handed alpha
Helix 2
AA2
B
87 107Right-handed alpha
Helix 3
AA3
B
122 131Right-handed alpha
Helix 4
AA4
B
145 150Right-handed 310
Helix 5
AA5
B
156 166Right-handed alpha
Helix 6
AA6
B
166 175Right-handed alpha
Helix 7
AA7
B
182 188Right-handed alpha
Helix 8
AA8
B
199 212Right-handed alpha
Helix 9
AA9
B
215 227Right-handed alpha
Helix 10
AB1
B
228 231Right-handed 310
Helix 11
AB2
B
233 236Right-handed 310
Helix 12
AB3
B
237 250Right-handed alpha
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There are 2 sheets in PDB entry 5WYB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
27 32anti-parallel
Strand 3
B
63 68parallel
Strand 4
B
111 116parallel
Strand 5
B
133 137parallel
Strand 6
B
193 195parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
119 121parallel
Strand 3
B
141 143parallel
Strand 4
B
180 181anti-parallel
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