Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WYD entry

There are 6 chains in PDB entry 5WYD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	ARG 270
B	LYS 9	ARG 270
C	LYS 9	ARG 270
D	LYS 9	ARG 270
E	LYS 9	ARG 270
F	LYS 9	ARG 270

There are 75 helices in PDB entry 5WYD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	58	Right-handed alpha
Helix 2	AA2	A	87	107	Right-handed alpha
Helix 3	AA3	A	122	131	Right-handed alpha
Helix 4	AA4	A	145	150	Right-handed 310
Helix 5	AA5	A	156	177	Right-handed alpha
Helix 6	AA6	A	181	188	Right-handed alpha
Helix 7	AA7	A	199	212	Right-handed alpha
Helix 8	AA8	A	215	227	Right-handed alpha
Helix 9	AA9	A	227	232	Right-handed alpha
Helix 10	AB1	A	233	236	Right-handed 310
Helix 11	AB2	A	237	250	Right-handed alpha
Helix 12	AB3	A	251	263	Right-handed alpha
Helix 13	AB4	B	41	58	Right-handed alpha
Helix 14	AB5	B	87	107	Right-handed alpha
Helix 15	AB6	B	122	131	Right-handed alpha
Helix 16	AB7	B	145	150	Right-handed alpha
Helix 17	AB8	B	156	166	Right-handed alpha
Helix 18	AB9	B	166	177	Right-handed alpha
Helix 19	AC1	B	182	188	Right-handed alpha
Helix 20	AC2	B	199	213	Right-handed alpha
Helix 21	AC3	B	215	227	Right-handed alpha
Helix 22	AC4	B	227	232	Right-handed alpha
Helix 23	AC5	B	233	250	Right-handed alpha
Helix 24	AC6	B	251	263	Right-handed alpha
Helix 25	AC7	C	41	58	Right-handed alpha
Helix 26	AC8	C	87	107	Right-handed alpha
Helix 27	AC9	C	122	131	Right-handed alpha
Helix 28	AD1	C	156	166	Right-handed alpha
Helix 29	AD2	C	166	177	Right-handed alpha
Helix 30	AD3	C	182	188	Right-handed alpha
Helix 31	AD4	C	199	213	Right-handed alpha
Helix 32	AD5	C	215	227	Right-handed alpha
Helix 33	AD6	C	228	231	Right-handed 310
Helix 34	AD7	C	234	236	Right-handed 310
Helix 35	AD8	C	237	250	Right-handed alpha
Helix 36	AD9	C	251	264	Right-handed alpha
Helix 37	AE1	D	41	58	Right-handed alpha
Helix 38	AE2	D	80	84	Right-handed 310
Helix 39	AE3	D	87	107	Right-handed alpha
Helix 40	AE4	D	122	131	Right-handed alpha
Helix 41	AE5	D	145	150	Right-handed 310
Helix 42	AE6	D	156	166	Right-handed alpha
Helix 43	AE7	D	166	175	Right-handed alpha
Helix 44	AE8	D	182	188	Right-handed alpha
Helix 45	AE9	D	199	212	Right-handed alpha
Helix 46	AF1	D	215	232	Right-handed alpha
Helix 47	AF2	D	234	236	Right-handed 310
Helix 48	AF3	D	237	250	Right-handed alpha
Helix 49	AF4	D	251	263	Right-handed alpha
Helix 50	AF5	E	41	58	Right-handed alpha
Helix 51	AF6	E	80	84	Right-handed 310
Helix 52	AF7	E	87	107	Right-handed alpha
Helix 53	AF8	E	121	131	Right-handed alpha
Helix 54	AF9	E	145	150	Right-handed 310
Helix 55	AG1	E	156	166	Right-handed alpha
Helix 56	AG2	E	166	176	Right-handed alpha
Helix 57	AG3	E	182	188	Right-handed alpha
Helix 58	AG4	E	199	213	Right-handed alpha
Helix 59	AG5	E	215	227	Right-handed alpha
Helix 60	AG6	E	227	232	Right-handed alpha
Helix 61	AG7	E	234	236	Right-handed 310
Helix 62	AG8	E	237	250	Right-handed alpha
Helix 63	AG9	E	251	263	Right-handed alpha
Helix 64	AH1	F	41	58	Right-handed alpha
Helix 65	AH2	F	87	107	Right-handed alpha
Helix 66	AH3	F	122	131	Right-handed alpha
Helix 67	AH4	F	156	166	Right-handed alpha
Helix 68	AH5	F	166	175	Right-handed alpha
Helix 69	AH6	F	182	188	Right-handed alpha
Helix 70	AH7	F	199	212	Right-handed alpha
Helix 71	AH8	F	215	227	Right-handed alpha
Helix 72	AH9	F	227	232	Right-handed alpha
Helix 73	AI1	F	233	236	Right-handed 310
Helix 74	AI2	F	237	250	Right-handed alpha
Helix 75	AI3	F	251	264	Right-handed alpha

There are 12 sheets in PDB entry 5WYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	27	32	anti-parallel
Strand 3	A	63	68	parallel
Strand 4	A	111	116	parallel
Strand 5	A	133	137	parallel
Strand 6	A	193	195	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	119	121	parallel
Strand 3	A	142	143	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	27	32	anti-parallel
Strand 3	B	63	68	parallel
Strand 4	B	111	116	parallel
Strand 5	B	133	137	parallel
Strand 6	B	193	195	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	141	143	parallel
Strand 3	B	180	181	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	27	32	anti-parallel
Strand 3	C	63	68	parallel
Strand 4	C	111	116	parallel
Strand 5	C	133	137	parallel
Strand 6	C	193	195	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	119	121	parallel
Strand 3	C	141	143	parallel
Strand 4	C	180	181	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	27	32	anti-parallel
Strand 3	D	63	68	parallel
Strand 4	D	111	116	parallel
Strand 5	D	133	137	parallel
Strand 6	D	193	195	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	180	181	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	27	32	anti-parallel
Strand 3	E	63	68	parallel
Strand 4	E	111	116	parallel
Strand 5	E	133	137	parallel
Strand 6	E	193	195	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	180	181	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	27	32	anti-parallel
Strand 3	F	63	68	parallel
Strand 4	F	111	116	parallel
Strand 5	F	133	137	parallel
Strand 6	F	193	195	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	121	first strand
Strand 2	F	141	143	parallel
Strand 3	F	180	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WYD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYD