Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WYH entry

There are 4 chains in PDB entry 5WYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2PRO 182
B
 GLU 5LEU 200
C
 ALA -2PRO 182
D
 LEU 3LEU 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5WYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
95 107Right-handed alpha
Helix 4
AA4
B
11 27Right-handed alpha
Helix 5
AA5
B
29 46Right-handed alpha
Helix 6
AA6
B
50 61Right-handed alpha
Helix 7
AA7
B
61 69Right-handed alpha
Helix 8
AA8
B
84 90Right-handed alpha
Helix 9
AA9
B
103 121Right-handed alpha
Helix 10
AB1
B
124 134Right-handed alpha
Helix 11
AB2
B
135 146Right-handed alpha
Helix 12
AB3
B
183 200Right-handed alpha
Helix 13
AB4
C
19 26Right-handed alpha
Helix 14
AB5
C
42 53Right-handed alpha
Helix 15
AB6
C
95 107Right-handed alpha
Helix 16
AB7
D
11 27Right-handed alpha
Helix 17
AB8
D
29 46Right-handed alpha
Helix 18
AB9
D
50 61Right-handed alpha
Helix 19
AC1
D
61 69Right-handed alpha
Helix 20
AC2
D
84 90Right-handed alpha
Helix 21
AC3
D
103 121Right-handed alpha
Helix 22
AC4
D
124 134Right-handed alpha
Helix 23
AC5
D
135 146Right-handed alpha
Helix 24
AC6
D
183 199Right-handed alpha
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There are 6 sheets in PDB entry 5WYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
33 36parallel
Strand 3
A
1 6parallel
Strand 4
A
149 156anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
171 180anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
110 113parallel
Strand 4
A
127 131parallel
Strand 5
A
120 124anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
174 175anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 58first strand
Strand 2
C
33 36parallel
Strand 3
C
1 6parallel
Strand 4
C
149 156anti-parallel
Strand 5
C
159 168anti-parallel
Strand 6
C
171 180anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 77first strand
Strand 2
C
80 85anti-parallel
Strand 3
C
110 113parallel
Strand 4
C
127 131parallel
Strand 5
C
120 124anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 166first strand
Strand 2
D
174 175anti-parallel
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