Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WYS entry

There is 1 chain in PDB entry 5WYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5WYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 35Right-handed alpha
Helix 2
AA2
A
53 71Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
110 122Right-handed alpha
Helix 5
AA5
A
132 141Right-handed alpha
Helix 6
AA6
A
163 170Right-handed alpha
Helix 7
AA7
A
212 224Right-handed alpha
Helix 8
AA8
A
246 259Right-handed alpha
Helix 9
AA9
A
269 280Right-handed alpha
Helix 10
AB1
A
288 297Right-handed alpha
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
320 331Right-handed alpha
Helix 13
AB4
A
343 346Right-handed 310
Helix 14
AB5
A
404 409Right-handed alpha
Helix 15
AB6
A
436 440Right-handed 310
Helix 16
AB7
A
450 461Right-handed alpha
Helix 17
AB8
A
494 503Right-handed alpha
Helix 18
AB9
A
531 543Right-handed alpha
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There are 9 sheets in PDB entry 5WYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
417 426anti-parallel
Strand 5
A
412 413anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
417 426anti-parallel
Strand 5
A
432 435anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
261 264parallel
Strand 4
A
236 239parallel
Strand 5
A
284 286parallel
Strand 6
A
311 313parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
77 82parallel
Strand 3
A
125 128parallel
Strand 4
A
148 151parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
208 211anti-parallel
Strand 3
A
400 401anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
447 449anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 474first strand
Strand 2
A
478 487anti-parallel
Strand 3
A
515 518parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
529 530anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il