Analysis of interatomic Contacts of Structural Units in PDB entry:
5WZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WZP entry

There are 2 chains in PDB entry 5WZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 628
B	MET 1	ALA 630

There are 36 helices in PDB entry 5WZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	158	Right-handed 310
Helix 2	AA2	A	185	187	Right-handed 310
Helix 3	AA3	A	230	244	Right-handed alpha
Helix 4	AA4	A	250	258	Right-handed alpha
Helix 5	AA5	A	259	265	Right-handed 310
Helix 6	AA6	A	298	312	Right-handed alpha
Helix 7	AA7	A	340	343	Right-handed 310
Helix 8	AA8	A	344	359	Right-handed alpha
Helix 9	AA9	A	380	384	Right-handed 310
Helix 10	AB1	A	410	425	Right-handed alpha
Helix 11	AB2	A	447	451	Right-handed 310
Helix 12	AB3	A	453	471	Right-handed alpha
Helix 13	AB4	A	481	485	Right-handed 310
Helix 14	AB5	A	496	501	Right-handed 310
Helix 15	AB6	A	513	520	Right-handed alpha
Helix 16	AB7	A	538	545	Right-handed alpha
Helix 17	AB8	A	574	590	Right-handed alpha
Helix 18	AB9	A	601	603	Right-handed 310
Helix 19	AC1	B	49	51	Right-handed 310
Helix 20	AC2	B	151	158	Right-handed 310
Helix 21	AC3	B	185	187	Right-handed 310
Helix 22	AC4	B	230	245	Right-handed alpha
Helix 23	AC5	B	250	258	Right-handed alpha
Helix 24	AC6	B	259	265	Right-handed 310
Helix 25	AC7	B	298	312	Right-handed alpha
Helix 26	AC8	B	340	343	Right-handed 310
Helix 27	AC9	B	344	359	Right-handed alpha
Helix 28	AD1	B	380	384	Right-handed 310
Helix 29	AD2	B	410	425	Right-handed alpha
Helix 30	AD3	B	453	471	Right-handed alpha
Helix 31	AD4	B	481	488	Right-handed 310
Helix 32	AD5	B	496	500	Right-handed 310
Helix 33	AD6	B	513	520	Right-handed alpha
Helix 34	AD7	B	538	545	Right-handed alpha
Helix 35	AD8	B	575	590	Right-handed alpha
Helix 36	AD9	B	601	603	Right-handed 310

There are 15 sheets in PDB entry 5WZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	9	13	anti-parallel
Strand 3	A	20	24	anti-parallel
Strand 4	A	27	30	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	38	39	anti-parallel
Strand 3	A	113	114	anti-parallel
Strand 4	A	203	208	anti-parallel
Strand 5	A	189	195	anti-parallel
Strand 6	A	148	149	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	64	73	anti-parallel
Strand 3	A	79	88	anti-parallel
Strand 4	A	94	100	anti-parallel
Strand 5	A	219	226	anti-parallel
Strand 6	A	178	183	anti-parallel
Strand 7	A	168	172	anti-parallel
Strand 8	A	129	132	anti-parallel
Strand 9	A	138	141	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	474	477	parallel
Strand 3	A	431	434	parallel
Strand 4	A	362	367	parallel
Strand 5	A	317	322	parallel
Strand 6	A	268	273	parallel
Strand 7	A	548	553	parallel
Strand 8	A	526	527	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	294	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	403	405	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	599	first strand
Strand 2	A	607	611	anti-parallel
Strand 3	A	616	620	anti-parallel
Strand 4	A	625	627	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	9	13	anti-parallel
Strand 3	B	20	24	anti-parallel
Strand 4	B	27	30	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	38	40	anti-parallel
Strand 3	B	112	114	anti-parallel
Strand 4	B	203	208	anti-parallel
Strand 5	B	189	195	anti-parallel
Strand 6	B	148	149	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	64	72	anti-parallel
Strand 3	B	80	88	anti-parallel
Strand 4	B	94	100	anti-parallel
Strand 5	B	219	226	anti-parallel
Strand 6	B	178	183	anti-parallel
Strand 7	B	168	172	anti-parallel
Strand 8	B	129	132	anti-parallel
Strand 9	B	138	139	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	474	477	parallel
Strand 3	B	431	434	parallel
Strand 4	B	362	367	parallel
Strand 5	B	317	321	parallel
Strand 6	B	268	272	parallel
Strand 7	B	548	553	parallel
Strand 8	B	526	527	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	295	296	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	403	405	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	450	452	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	599	first strand
Strand 2	B	606	611	anti-parallel
Strand 3	B	616	620	anti-parallel
Strand 4	B	625	628	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WZP