Analysis of interatomic Contacts of Structural Units in PDB entry:
5X04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X04 entry

There are 2 chains in PDB entry 5X04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7LYS 365
B
 PHE 100LYS 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5X04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-6 -2Right-handed 310
Helix 2
AA2
A
-1 101Right-handed alpha
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
A
125 144Right-handed alpha
Helix 5
AA5
A
154 160Right-handed alpha
Helix 6
AA6
A
233 241Right-handed alpha
Helix 7
AA7
A
242 244Right-handed 310
Helix 8
AA8
A
251 255Right-handed 310
Helix 9
AA9
A
276 280Right-handed 310
Helix 10
AB1
A
287 297Right-handed alpha
Helix 11
AB2
A
300 306Right-handed alpha
Helix 12
AB3
B
114 118Right-handed 310
Helix 13
AB4
B
125 144Right-handed alpha
Helix 14
AB5
B
154 160Right-handed alpha
Helix 15
AB6
B
233 241Right-handed alpha
Helix 16
AB7
B
242 244Right-handed 310
Helix 17
AB8
B
251 255Right-handed 310
Helix 18
AB9
B
276 280Right-handed 310
Helix 19
AC1
B
287 297Right-handed alpha
Helix 20
AC2
B
300 306Right-handed alpha
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There are 4 sheets in PDB entry 5X04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
182 192anti-parallel
Strand 3
A
196 205anti-parallel
Strand 4
A
211 223anti-parallel
Strand 5
A
229 230anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
182 192anti-parallel
Strand 3
A
196 205anti-parallel
Strand 4
A
211 223anti-parallel
Strand 5
A
162 173anti-parallel
Strand 6
A
307 316anti-parallel
Strand 7
A
354 364anti-parallel
Strand 8
A
341 348anti-parallel
Strand 9
A
326 333anti-parallel
Strand 10
A
268 273anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
182 192anti-parallel
Strand 4
B
196 205anti-parallel
Strand 5
B
211 223anti-parallel
Strand 6
B
229 230anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
182 192anti-parallel
Strand 4
B
196 205anti-parallel
Strand 5
B
211 223anti-parallel
Strand 6
B
162 173anti-parallel
Strand 7
B
307 316anti-parallel
Strand 8
B
354 364anti-parallel
Strand 9
B
337 343anti-parallel
Strand 10
B
326 333anti-parallel
Strand 11
B
268 273anti-parallel
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