Analysis of interatomic Contacts of Structural Units in PDB entry:
5X06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X06 entry

There are 4 chains in PDB entry 5X06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	ARG 365
B	SER -1	ARG 365
C	SER -1	ARG 365
D	SER -1	VAL 195

There are 92 helices in PDB entry 5X06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	18	Right-handed alpha
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	72	82	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	131	141	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	152	155	Right-handed 310
Helix 8	AA8	A	197	206	Right-handed alpha
Helix 9	AA9	A	260	271	Right-handed alpha
Helix 10	AB1	A	272	274	Right-handed 310
Helix 11	AB2	A	321	331	Right-handed alpha
Helix 12	AB3	B	10	18	Right-handed alpha
Helix 13	AB4	B	27	30	Right-handed 310
Helix 14	AB5	B	72	82	Right-handed alpha
Helix 15	AB6	B	112	116	Right-handed 310
Helix 16	AB7	B	131	141	Right-handed alpha
Helix 17	AB8	B	142	146	Right-handed 310
Helix 18	AB9	B	152	155	Right-handed 310
Helix 19	AC1	B	197	206	Right-handed alpha
Helix 20	AC2	B	260	271	Right-handed alpha
Helix 21	AC3	B	272	274	Right-handed 310
Helix 22	AC4	B	321	331	Right-handed alpha
Helix 23	AC5	C	10	18	Right-handed alpha
Helix 24	AC6	C	27	30	Right-handed 310
Helix 25	AC7	C	72	82	Right-handed alpha
Helix 26	AC8	C	112	116	Right-handed 310
Helix 27	AC9	C	131	141	Right-handed alpha
Helix 28	AD1	C	142	146	Right-handed 310
Helix 29	AD2	C	152	155	Right-handed 310
Helix 30	AD3	C	197	206	Right-handed alpha
Helix 31	AD4	C	260	271	Right-handed alpha
Helix 32	AD5	C	272	274	Right-handed 310
Helix 33	AD6	C	321	331	Right-handed alpha
Helix 34	AD7	D	10	18	Right-handed alpha
Helix 35	AD8	D	27	30	Right-handed 310
Helix 36	AD9	D	72	82	Right-handed alpha
Helix 37	AE1	D	112	116	Right-handed 310
Helix 38	AE2	D	131	141	Right-handed alpha
Helix 39	AE3	D	142	146	Right-handed 310
Helix 40	AE4	D	152	155	Right-handed 310
Helix 41	AE5	D	197	206	Right-handed alpha
Helix 42	AE6	D	260	271	Right-handed alpha
Helix 43	AE7	D	321	331	Right-handed alpha
Helix 44	AE8	E	27	38	Right-handed alpha
Helix 45	AE9	E	55	69	Right-handed alpha
Helix 46	AF1	E	80	85	Right-handed 310
Helix 47	AF2	E	86	91	Right-handed 310
Helix 48	AF3	E	92	96	Right-handed 310
Helix 49	AF4	E	103	108	Right-handed 310
Helix 50	AF5	E	110	127	Right-handed alpha
Helix 51	AF6	E	139	143	Right-handed 310
Helix 52	AF7	E	147	155	Right-handed alpha
Helix 53	AF8	E	166	182	Right-handed alpha
Helix 54	AF9	E	189	197	Right-handed alpha
Helix 55	AG1	E	200	217	Right-handed alpha
Helix 56	AG2	E	224	231	Right-handed alpha
Helix 57	AG3	F	27	38	Right-handed alpha
Helix 58	AG4	F	55	69	Right-handed alpha
Helix 59	AG5	F	81	85	Right-handed 310
Helix 60	AG6	F	86	91	Right-handed 310
Helix 61	AG7	F	92	96	Right-handed 310
Helix 62	AG8	F	103	108	Right-handed 310
Helix 63	AG9	F	110	127	Right-handed alpha
Helix 64	AH1	F	139	143	Right-handed 310
Helix 65	AH2	F	147	155	Right-handed alpha
Helix 66	AH3	F	166	182	Right-handed alpha
Helix 67	AH4	F	186	197	Right-handed alpha
Helix 68	AH5	F	200	217	Right-handed alpha
Helix 69	AH6	F	223	231	Right-handed alpha
Helix 70	AH7	G	27	38	Right-handed alpha
Helix 71	AH8	G	55	69	Right-handed alpha
Helix 72	AH9	G	80	85	Right-handed 310
Helix 73	AI1	G	86	91	Right-handed 310
Helix 74	AI2	G	92	96	Right-handed 310
Helix 75	AI3	G	103	108	Right-handed 310
Helix 76	AI4	G	110	127	Right-handed alpha
Helix 77	AI5	G	147	155	Right-handed alpha
Helix 78	AI6	G	167	180	Right-handed alpha
Helix 79	AI7	G	189	195	Right-handed alpha
Helix 80	AI8	G	202	217	Right-handed alpha
Helix 81	AI9	H	18	22	Right-handed 310
Helix 82	AJ1	H	27	38	Right-handed alpha
Helix 83	AJ2	H	55	69	Right-handed alpha
Helix 84	AJ3	H	80	85	Right-handed 310
Helix 85	AJ4	H	86	91	Right-handed 310
Helix 86	AJ5	H	92	96	Right-handed 310
Helix 87	AJ6	H	103	108	Right-handed 310
Helix 88	AJ7	H	110	127	Right-handed alpha
Helix 89	AJ8	H	139	143	Right-handed 310
Helix 90	AJ9	H	147	155	Right-handed alpha
Helix 91	AK1	H	166	180	Right-handed alpha
Helix 92	AK2	H	200	208	Right-handed alpha

There are 16 sheets in PDB entry 5X06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	87	92	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	B	301	307	anti-parallel
Strand 6	B	289	295	anti-parallel
Strand 7	B	280	286	anti-parallel
Strand 8	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	230	235	anti-parallel
Strand 6	A	222	227	anti-parallel
Strand 7	A	214	219	anti-parallel
Strand 8	A	124	130	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	335	340	anti-parallel
Strand 4	A	347	351	anti-parallel
Strand 5	A	357	361	anti-parallel
Strand 6	A	176	196	anti-parallel
Strand 7	A	157	172	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	320	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	289	295	anti-parallel
Strand 4	A	301	307	anti-parallel
Strand 5	B	104	109	anti-parallel
Strand 6	B	96	101	anti-parallel
Strand 7	B	87	93	anti-parallel
Strand 8	B	2	6	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	230	235	anti-parallel
Strand 6	B	222	227	anti-parallel
Strand 7	B	214	219	anti-parallel
Strand 8	B	124	130	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	335	340	anti-parallel
Strand 4	B	347	351	anti-parallel
Strand 5	B	357	361	anti-parallel
Strand 6	B	176	196	anti-parallel
Strand 7	B	157	172	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	87	93	anti-parallel
Strand 3	C	96	101	anti-parallel
Strand 4	C	104	109	anti-parallel
Strand 5	D	301	307	anti-parallel
Strand 6	D	289	295	anti-parallel
Strand 7	D	280	286	anti-parallel
Strand 8	D	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	230	235	anti-parallel
Strand 6	C	222	227	anti-parallel
Strand 7	C	214	219	anti-parallel
Strand 8	C	124	130	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	310	first strand
Strand 2	C	254	259	anti-parallel
Strand 3	C	335	340	anti-parallel
Strand 4	C	347	351	anti-parallel
Strand 5	C	357	361	anti-parallel
Strand 6	C	176	196	anti-parallel
Strand 7	C	157	172	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	320	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	289	295	anti-parallel
Strand 4	C	301	306	anti-parallel
Strand 5	D	104	109	anti-parallel
Strand 6	D	96	101	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	41	47	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	230	235	anti-parallel
Strand 6	D	222	227	anti-parallel
Strand 7	D	214	219	anti-parallel
Strand 8	D	124	130	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	254	259	anti-parallel
Strand 3	D	335	340	anti-parallel
Strand 4	D	347	351	anti-parallel
Strand 5	D	357	361	anti-parallel
Strand 6	D	176	196	anti-parallel
Strand 7	D	157	172	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	78	first strand
Strand 2	E	98	102	parallel
Strand 3	E	131	136	parallel
Strand 4	E	45	49	parallel
Strand 5	E	158	161	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	78	first strand
Strand 2	F	98	102	parallel
Strand 3	F	131	136	parallel
Strand 4	F	45	49	parallel
Strand 5	F	158	161	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	78	first strand
Strand 2	G	98	102	parallel
Strand 3	G	131	134	parallel
Strand 4	G	45	49	parallel
Strand 5	G	158	161	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	78	first strand
Strand 2	H	98	102	parallel
Strand 3	H	131	136	parallel
Strand 4	H	45	49	parallel
Strand 5	H	158	161	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X06

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X06