Analysis of interatomic Contacts of Structural Units in PDB entry:
5X07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X07 entry

There are 12 chains in PDB entry 5X07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T 1 G 16
E
 C 1 A 16
F
 GLY 155SER 239
A
 T 1 G 16
B
 C 1 A 16
C
 GLY 155ASP 238
G
 T 1 G 16
H
 C 1 A 16
I
 HIS 157ASP 238
J
 T 1 G 16
K
 C 1 A 16
L
 GLY 155SER 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5X07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
163 174Right-handed alpha
Helix 2
AA2
F
181 193Right-handed alpha
Helix 3
AA3
F
194 198Right-handed 310
Helix 4
AA4
F
199 214Right-handed alpha
Helix 5
AA5
C
163 175Right-handed alpha
Helix 6
AA6
C
181 193Right-handed alpha
Helix 7
AA7
C
194 198Right-handed 310
Helix 8
AA8
C
199 214Right-handed alpha
Helix 9
AA9
I
163 174Right-handed alpha
Helix 10
AB1
I
182 193Right-handed alpha
Helix 11
AB2
I
194 198Right-handed 310
Helix 12
AB3
I
199 214Right-handed alpha
Helix 13
AB4
L
163 175Right-handed alpha
Helix 14
AB5
L
182 193Right-handed alpha
Helix 15
AB6
L
194 198Right-handed 310
Helix 16
AB7
L
199 214Right-handed alpha
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There are 4 sheets in PDB entry 5X07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
179 180first strand
Strand 2
F
232 235anti-parallel
Strand 3
F
217 220anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
232 235anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
179 181first strand
Strand 2
I
232 235anti-parallel
Strand 3
I
217 220anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
179 181first strand
Strand 2
L
232 235anti-parallel
Strand 3
L
217 220anti-parallel
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