Analysis of interatomic Contacts of Structural Units in PDB entry:
5X09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X09 entry

There is 1 chain in PDB entry 5X09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 51ALA 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5X09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 222Right-handed alpha
Helix 2
AA2
A
239 251Right-handed alpha
Helix 3
AA3
A
266 275Right-handed alpha
Helix 4
AA4
A
286 289Right-handed 310
Helix 5
AA5
A
301 322Right-handed alpha
Helix 6
AA6
A
333 338Right-handed alpha
Helix 7
AA7
A
362 369Right-handed alpha
Helix 8
AA8
A
418 424Right-handed alpha
Helix 9
AA9
A
439 451Right-handed alpha
Helix 10
AB1
A
454 480Right-handed alpha
Helix 11
AB2
A
485 502Right-handed alpha
Helix 12
AB3
A
516 540Right-handed alpha
Helix 13
AB4
A
543 549Right-handed alpha
Helix 14
AB5
A
551 559Right-handed alpha
Helix 15
AB6
A
560 562Right-handed 310
Helix 16
AB7
A
564 570Right-handed alpha
Helix 17
AB8
A
570 587Right-handed alpha
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There are 5 sheets in PDB entry 5X09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
191 194anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
291 295parallel
Strand 3
A
255 258parallel
Strand 4
A
325 330parallel
Strand 5
A
383 392parallel
Strand 6
A
372 375anti-parallel
Strand 7
A
203 205anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
291 295parallel
Strand 3
A
255 258parallel
Strand 4
A
325 330parallel
Strand 5
A
383 392parallel
Strand 6
A
229 233parallel
Strand 7
A
413 414parallel
Strand 8
A
436 437anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
166 168anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
175 178anti-parallel
Strand 4
A
184 187anti-parallel
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